Yun Shi

Prof. Dr. Yun Shi

Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, Beijing 100081, China
orcid

Research Focus & Metrics

Academic Career Length

16Years (2011-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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7 January 2018 in Remote Sensing
Verified
Journal Article
Open access
PDF file
SJShunping Ji
Shunping Ji
ZCZhang Chi
Zhang Chi
AXAnjian Xu
Anjian Xu
YSYun Shi
Yun Shi
YDYulin Duan
Yulin Duan
This study describes a novel three-dimensional (3D) convolutional neural networks (CNN) based method that automatically classifies crops from spatio-temporal remote sensing images. First, 3D kernel is designed according to the structure of multi-spectral multi-temporal remote sensing data. Secondly, the 3D CNN framework with fine-tuned parameters is designed for training 3D crop samples and learning spatio-temporal discriminative representations, with the full crop growth cycles being preserved. In addition, we introduce an active learning strategy to the CNN model to improve labelling accuracy up to a required threshold with the most efficiency. Finally, experiments are carried out to test the advantage of the 3D CNN, in comparison to the two-dimensional (2D) CNN and other conventional methods. Our experiments show that the 3D CNN is especially suitable in characterizing the dynamics of crop growth and outperformed the other mainstream methods.

14 December 2019 in Remote Sensing
Verified
Journal Article
Open access
PDF file
LZLicheng Zhao
Licheng Zhao
YSYun Shi
Yun Shi
BLBin Liu
Bin Liu
CHCiara L. Hovis
Ciara L. Hovis
YDYulin Duan
Yulin Duan
ZSZhongchao Shi
Zhongchao Shi
Accurate crop distribution maps provide important information for crop censuses, yield monitoring and agricultural insurance assessments. Most existing studies apply low spatial resolution satellite images for crop distribution mapping, even in areas with a fragmented landscape. Unmanned aerial vehicle (UAV) imagery provides an alternative imagery source for crop mapping, yet its spectral resolution is usually lower than satellite images. In order to produce more accurate maps without losing any spatial heterogeneity (e.g., the physical boundary of land parcel), this study fuses Sentinel-2A and UAV images to map crop distribution at a finer spatial scale (i.e., land parcel scale) in an experimental site with various cropping patterns in Heilongjiang Province, Northeast China. Using a random forest algorithm, the original, as well as the fused images, are classified into 10 categories: rice, corn, soybean, buckwheat, other vegetations, greenhouses, bare land, water, roads and houses. In addition, we test the effect of UAV image choice by fusing Sentinel-2A with different UAV images at multiples spatial resolutions: 0.03 m, 0.10 m, 0.50 m, 1.00 m and 3.00 m. Overall, the fused images achieved higher classification accuracies, ranging between 10.58% and 16.39%, than the original images. However, the fused image based on the finest UAV image (i.e., 0.03 m) does not result in the highest accuracy. Instead, the 0.10 m spatial resolution UAV image produced the most accurate map. When the spatial resolution is less than 0.10 m, accuracy decreases gradually as spatial resolution decreases. The results of this paper not only indicate the possibility of combining satellite images and UAV images for land parcel level crop mapping for fragmented landscapes, but it also implies a potential scheme to exploit optimal choice of spatial resolution in fusing UAV images and Sentinel-2A, with little to no adverse side-effects.

13 October 2021 in Frontiers in Plant Science
Verified
Journal Article
Open access
WZWenli Zhang
Wenli Zhang
YLYuxin Liu
Yuxin Liu
KCKaizhen Chen
Kaizhen Chen
HLHuibin Li
Huibin Li
YDYulin Duan
Yulin Duan
Wei GuoWei Guo
Wei Guo
In recent years, deep-learning-based fruit-detection technology has exhibited excellent performance in modern horticulture research. However, deploying deep learning algorithms in real-time field applications is still challenging, owing to the relatively low image processing capability of edge devices. Such limitations are becoming a new bottleneck and hindering the utilization of AI algorithms in modern horticulture. In this paper, we propose a lightweight fruit-detection algorithm, specifically designed for edge devices. The algorithm is based on Light-CSPNet as the backbone network, an improved feature-extraction module, a down-sampling method, and a feature-fusion module, and it ensures real-time detection on edge devices while maintaining the fruit-detection accuracy. The proposed algorithm was tested on three edge devices: NVIDIA Jetson Xavier NX, NVIDIA Jetson TX2, and NVIDIA Jetson NANO. The experimental results show that the average detection precision of the proposed algorithm for orange, tomato, and apple datasets are 0.93, 0.847, and 0.850, respectively. Deploying the algorithm, the detection speed of NVIDIA Jetson Xavier NX reaches 21.3, 24.8, and 22.2 FPS, while that of NVIDIA Jetson TX2 reaches 13.9, 14.1, and 14.5 FPS and that of NVIDIA Jetson NANO reaches 6.3, 5.0, and 8.5 FPS for the three datasets. Additionally, the proposed algorithm provides a component add/remove function to flexibly adjust the model structure, considering the trade-off between the detection accuracy and speed in practical usage.

3 July 2021 in Remote Sensing
Verified
Journal Article
Open access
PDF file
WHWANG HAOZHOU
WANG HAOZHOU
YDYulin Duan
Yulin Duan
YSYun Shi
Yun Shi
YKYoichiro Kato
Yoichiro Kato
SNSeisi Ninomiya
Seisi Ninomiya
Wei GuoWei Guo
Wei Guo
Unmanned aerial vehicle (UAV) and structure from motion (SfM) photogrammetry techniques are widely used for field-based, high-throughput plant phenotyping nowadays, but some of the intermediate processes throughout the workflow remain manual. For example, geographic information system (GIS) software is used to manually assess the 2D/3D field reconstruction quality and cropping region of interests (ROIs) from the whole field. In addition, extracting phenotypic traits from raw UAV images is more competitive than directly from the digital orthomosaic (DOM). Currently, no easy-to-use tools are available to implement previous tasks for commonly used commercial SfM software, such as Pix4D and Agisoft Metashape. Hence, an open source software package called easy intermediate data processor (EasyIDP; MIT license) was developed to decrease the workload in intermediate data processing mentioned above. The functions of the proposed package include (1) an ROI cropping module, assisting in reconstruction quality assessment and cropping ROIs from the whole field, and (2) an ROI reversing module, projecting ROIs to relative raw images. The result showed that both cropping and reversing modules work as expected. Moreover, the effects of ROI height selection and reversed ROI position on raw images to reverse calculation were discussed. This tool shows great potential for decreasing workload in data annotation for machine learning applications.

24 February 2017 in Sensors
Verified
Journal Article
Open access
PDF file
Qiangyi YuQiangyi Yu
Qiangyi Yu
YSYun Shi
Yun Shi
HTHuajun Tang
Huajun Tang
PYPeng Yang
Peng Yang
AXAnkun Xie
Ankun Xie
WWWenbin Wu
Wenbin Wu
Currently, observations of an agricultural land system (ALS) largely depend on remotely-sensed images, focusing on its biophysical features. While social surveys capture the socioeconomic features, the information was inadequately integrated with the biophysical features of an ALS and the applications are limited due to the issues of cost and efficiency to carry out such detailed and comparable social surveys at a large spatial coverage. In this paper, we introduce a smartphone-based app, called eFarm: a crowdsourcing and human sensing tool to collect the geotagged ALS information at the land parcel level, based on the high resolution remotely-sensed images. We illustrate its main functionalities, including map visualization, data management, and data sensing. Results of the trial test suggest the system works well. We believe the tool is able to acquire the human–land integrated information which is broadly-covered and timely-updated, thus presenting great potential for improving sensing, mapping, and modeling of ALS studies.

22 March 2019 in Journal of Visualization
Verified
Journal Article
Closed access
PDF file
CBChongke Bi
Chongke Bi
LYLu Yang
Lu Yang
YDYulin Duan
Yulin Duan
YSYun Shi
Yun Shi