Daniel Walsh

Dr. Daniel Walsh

orcid

Research Focus & Metrics

Academic Career Length

23Years (2004-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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21 April 2016 in PLOS Biology
Verified
Journal Article
Open access
PDF file
KMKezia Manlove
Kezia Manlove
JWJosephine G Walker
Josephine G Walker
MCMeggan E Craft
Meggan E Craft
KHKathryn Huyvaert
Kathryn Huyvaert
MJMaxwell Joseph
Maxwell Joseph
PCPaul C Cross
Paul C Cross
The One Health initiative is a global effort fostering interdisciplinary collaborations to address challenges in human, animal, and environmental health. While One Health has received considerable press, its benefits remain unclear because its effects have not been quantitatively described. We systematically surveyed the published literature and used social network analysis to measure interdisciplinarity in One Health studies constructing dynamic pathogen transmission models. The number of publications fulfilling our search criteria increased by 14.6% per year, which is faster than growth rates for life sciences as a whole and for most biology subdisciplines. Surveyed publications clustered into three communities: one used by ecologists, one used by veterinarians, and a third diverse-authorship community used by population biologists, mathematicians, epidemiologists, and experts in human health. Overlap between these communities increased through time in terms of author number, diversity of co-author affiliations, and diversity of citations. However, communities continue to differ in the systems studied, questions asked, and methods employed. While the infectious disease research community has made significant progress toward integrating its participating disciplines, some segregation—especially along the veterinary/ecological research interface—remains. A cohesive reaction to emerging threats requires the efficient dissemination of knowledge and methodologies across multiple disciplinary boundaries. A “One Health” approach has been advocated to facilitate cross-disciplinary communication and research in responding to challenges in human, animal, and environmental health. We empirically describe collaboration networks surrounding one aspect of this One Health initiative: infectious disease transmission models. A systematic literature review and social network analysis showed that dynamic disease modelling grew faster than most biological and natural science disciplines over the last 25 y, yet the field remains somewhat compartmentalized. Many researchers contribute to a broad, cross-disciplinary group of journals, but publications from veterinarians and ecologists remain segregated into relatively discrete communities. While the veterinary and ecological communities regularly reference the broad, cross-disciplinary group, they only rarely cite each other; furthermore, the highest-tiered medical journals contributed very few papers to our search. Therefore, our results are somewhat mixed: while One Health may have precipitated a great deal of research interest in infectious disease, it has not fully overcome the barriers that segregate its contributing disciplines.

16 September 2020 in Ecology and Evolution
Verified
Journal Article
Open access
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MTMichael A. Tabak
Michael A. Tabak
MNMohammad S. Norouzzadeh
Mohammad S. Norouzzadeh
DWDavid W. Wolfson
David W. Wolfson
ENErica J. Newton
Erica J. Newton
RBRaoul K. Boughton
Raoul K. Boughton
Ryan S MillerRyan S Miller
Ryan S Miller
Motion‐activated wildlife cameras (or “camera traps”) are frequently used to remotely and noninvasively observe animals. The vast number of images collected from camera trap projects has prompted some biologists to employ machine learning algorithms to automatically recognize species in these images, or at least filter‐out images that do not contain animals. These approaches are often limited by model transferability, as a model trained to recognize species from one location might not work as well for the same species in different locations. Furthermore, these methods often require advanced computational skills, making them inaccessible to many biologists. We used 3 million camera trap images from 18 studies in 10 states across the United States of America to train two deep neural networks, one that recognizes 58 species, the “species model,” and one that determines if an image is empty or if it contains an animal, the “empty‐animal model.” Our species model and empty‐animal model had accuracies of 96.8% and 97.3%, respectively. Furthermore, the models performed well on some out‐of‐sample datasets, as the species model had 91% accuracy on species from Canada (accuracy range 36%–91% across all out‐of‐sample datasets) and the empty‐animal model achieved an accuracy of 91%–94% on out‐of‐sample datasets from different continents. Our software addresses some of the limitations of using machine learning to classify images from camera traps. By including many species from several locations, our species model is potentially applicable to many camera trap studies in North America. We also found that our empty‐animal model can facilitate removal of images without animals globally. We provide the trained models in an R package (MLWIC2: Machine Learning for Wildlife Image Classification in R), which contains Shiny Applications that allow scientists with minimal programming experience to use trained models and train new models in six neural network architectures with varying depths.

1 March 2004 in Wildlife Society Bulletin
Verified
Journal Article
Closed access
DWDaniel Walsh
Daniel Walsh
GWGary C. White
Gary C. White
TRThomas E. Remington
Thomas E. Remington
DBDavid C. Bowden
David C. Bowden

15 February 2011 in Nature Communications
Verified
Journal Article
Open access
WWW. David Walter
W. David Walter
DWDaniel Walsh
Daniel Walsh
MFMatthew L. Farnsworth
Matthew L. Farnsworth
DWDana L. Winkelman
Dana L. Winkelman
MMMichael W. Miller
Michael W. Miller
Environmental factors-especially soil properties-have been suggested as potentially important in the transmission of infectious prion diseases. Because binding to montmorillonite (an aluminosilicate clay mineral) or clay-enriched soils had been shown to enhance experimental prion transmissibility, we hypothesized that prion transmission among mule deer might also be enhanced in ranges with relatively high soil clay content. In this study, we report apparent influences of soil clay content on the odds of prion infection in free-ranging deer. Analysis of data from prion-infected deer herds in northern Colorado, USA, revealed that a 1% increase in the clay-sized particle content in soils within the approximate home range of an individual deer increased its odds of infection by up to 8.9%. Our findings suggest that soil clay content and related environmental properties deserve greater attention in assessing risks of prion disease outbreaks and prospects for their control in both natural and production settings.

5 March 2020 in Ecology and Evolution
Verified
Journal Article
Open access
PDF file
TGTyler J. Garwood
Tyler J. Garwood
CLChadwick P. Lehman
Chadwick P. Lehman
DWDaniel Walsh
Daniel Walsh
ECE. Frances Cassirer
E. Frances Cassirer
TBThomas E. Besser
Thomas E. Besser
JJJonathan A. Jenks
Jonathan A. Jenks
Chronic pathogen carriage is one mechanism that allows diseases to persist in populations. We hypothesized that persistent or recurrent pneumonia in bighorn sheep (Ovis canadensis) populations may be caused by chronic carriers of Mycoplasma ovipneumoniae (Mo). Our experimental approach allowed us to address a conservation need while investigating the role of chronic carriage in disease persistence. We tested our hypothesis in two bighorn sheep populations in South Dakota, USA. We identified and removed Mo chronic carriers from the Custer State Park (treatment) population. Simultaneously, we identified carriers but did not remove them from the Rapid City population (control). We predicted removal would result in decreased pneumonia, mortality, and Mo prevalence. Both population ranges had similar habitat and predator communities but were sufficiently isolated to preclude intermixing. We classified chronic carriers as adults that consistently tested positive for Mo carriage over a 20‐month sampling period (n = 2 in the treatment population; n = 2 in control population). We failed to detect Mo or pneumonia in the treatment population after chronic carrier removal, while both remained in the control. Mortality hazard for lambs was reduced by 72% in the treatment population relative to the control (CI = 36%, 91%). There was also a 41% reduction in adult mortality hazard attributable to the treatment, although this was not statistically significant (CI = 82% reduction, 34% increase). Synthesis and Applications: These results support the hypothesis that Mo is a primary causative agent of persistent or recurrent respiratory disease in bighorn sheep populations and can be maintained by a few chronic carriers. Our findings provide direction for future research and management actions aimed at controlling pneumonia in wild sheep and may apply to other diseases.

5 January 2017 in Journal of Agricultural, Biological and Environmental Statistics
Verified
Journal Article
Closed access
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THTrevor J. Hefley
Trevor J. Hefley
MHMevin B. Hooten
Mevin B. Hooten
EHEphraim M. Hanks
Ephraim M. Hanks
RRRobin E. Russell
Robin E. Russell
DWDaniel Walsh
Daniel Walsh