James James

Dr. James James


Research Focus & Metrics

Academic Career Length

3Years (2024-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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Journal Article
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Yun YangYun Yang
Yun Yang
JYJianchao Yin
Jianchao Yin
JJJames James
James James
LXLin Xu
Lin Xu
WWWeihuang Wu
Weihuang Wu
ZHZhaodong Hao
Zhaodong Hao
Heat shock factors (Hsfs) play a crucial role in plant defense processes. However, the distribution and functional characteristics of Hsf genes in the relict plant Liriodendron chinense are still unclear. In this study, a total of 19 LcHsfs were identified and divided into three separate subgroups, comprising 10 LcHsfA, 7 LcHsfB, and 2 LcHsfC genes, respectively, based on their phylogenetic tree and the presence/absence of conserved protein domains. Whole-genome duplication and segmental duplication led to an expansion of the LhHsf gene family. The promoters of LcHsf genes are enriched for different types of cis-acting elements, including hormone responsive and abiotic-stress-responsive elements. The expression of LcHsfA3, LcHsfA4b, LcHsfA5, LcHsfB1b, and LcHsfB2b increased significantly as a result of both cold and drought treatments. LcHsfA2a, LcHsfA2b, and LcHsfA7 act as important genes whose expression levels correlate strongly with the expression of the LcHsp70, LcHsp110, and LcAPX genes under heat stress. In addition, we found that transiently transformed 35S:LcHsfA2a seedlings showed significantly lower levels of hydrogen peroxide (H2O2) after heat stress and showed a stronger thermotolerance. This study sheds light on the possible functions of LcHsf genes under abiotic stress and identifies potentially useful genes to target for molecular breeding, in order to develop more stress-resistant varieties.

17 June 2024 in Plants
Verified
Journal Article
Open access
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LTLu Tong
Lu Tong
MLMengyuan Lin
Mengyuan Lin
JJJames James
James James
BLBojun Liao
Bojun Liao
LLLu Lu
Lu Lu
ZHZhaodong Hao
Zhaodong Hao
Thioredoxin (TRX) is a small protein with REDOX activity that plays a crucial role in a plant’s growth, development, and stress resistance. The TRX family has been extensively studied in Arabidopsis, rice, and wheat, and so it is likely that its members have similar biological functions in Liriodendron that have not been reported in Liriodendron. In this study, we performed the genome-wide identification of the TRX gene family based on the Liriodendron chinense genome, leading to a total of 42 LcTRX gene members. A phylogenetic analysis categorized these 42 LcTRX proteins into 13 subfamilies. We further characterized their chromosome distributions, gene structures, conserved protein motifs, and cis-elements in the promoter regions. In addition, based on the publicly available transcriptome data for Liriodendron hybrid and following RT-qPCR experiments, we explored the expression patterns of LhTRXs to different abiotic stressors, i.e., drought, cold, and heat stress. Notably, we found that several LhTRXs, especially LhTRX-h3, were significantly upregulated in response to abiotic stress. In addition, the subcellular localization assay showed that LhTRX-h3 was mainly distributed in the cytoplasm. Subsequently, we obtained LhTRX-h3 overexpression (OE) and knockout (KO) callus lines in Liriodendron hybrid. Compared to the wild type (WT) and LhTRX-h3-KO callus proliferation of LhTRX-h3-OE lines was significantly enhanced with reduced reactive oxygen species (ROS) accumulation under drought stress. Our findings that LhTRX-h3 is sufficient to improve drought tolerance. and underscore the significance of the TRX gene family in environmental stress responses in Liriodendron.

9 September 2025 in Plants
Verified
Journal Article
Open access
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YYYuanming Yuanming
Yuanming Yuanming
NCNannan Chen
Nannan Chen
XSxiao sun
xiao sun
JJJames James
James James
JCJinhui Chen
Jinhui Chen
YCYing Chen
Ying Chen
Somatic embryogenesis (SE) is a crucial strategy for in vitro regeneration in woody plants, yet its efficiency is affected by multiple factors, and the underlying regulatory mechanisms remain insufficiently understood. In this study, callus tissues from two Liriodendron sino-americanum genotypes involving different hybrid combinations, ON-LoS and TN-LoS, were treated with varying concentrations (0, 0.005, 0.01, 0.05 mg/L) of exogenous zeatin (ZT) to evaluate its regulatory effect on SE. Treatment with 0.01 mg/L ZT significantly promoted SE in ON-LoS but suppressed it in TN-LoS, indicating that ZT elicited divergent regulatory effects on SE between the two genotypes. To explore the molecular basis of this divergence, transcriptome analysis was conducted at the early stage of SE. Differentially expressed genes (DEGs) were significantly enriched in hormone signaling, particularly in the cytokinin (CK) and brassinosteroid (BR) signaling pathways, as well as biosynthetic and redox-related pathways. In particular, given the established role of cell cycle-related gene CYCD3 (Lchi20922) in promoting cell division, CYCD3 was markedly upregulated by ZT in ON-LoS but downregulated in TN-LoS. These results indicate that ZT regulates SE efficiency through differential modulation of CYCD3 expression in distinct genotypes. This study enhances our understanding of the molecular basis of SE regulation in Liriodendron sino-americanum and offers a theoretical framework for improving regeneration efficiency in woody plants.

30 August 2025 in Plants
Verified
Journal Article
Open access
PDF file
WYWeng Yutao
Weng Yutao
JCJun Cao
Jun Cao
HFHao Fang
Hao Fang
BFBinjian Feng
Binjian Feng
JJJames James
James James
TCTielong Cheng
Tielong Cheng
Under the context of global climate change, the frequent occurrence of extreme low-temperature events poses a severe challenge to plant distribution and ecosystem stability. The arid and semi-arid regions of Northwestern China, as a sensitive response area to global change, have proven to possess significant development potential with their unique desert vegetation systems. This study focuses on the ecological adaptability mechanisms of Nitraria tangutorum Bobr., a key species of the desert ecosystem in Northwestern China, and systematically analyzes the evolution patterns of its geographical distribution under the coupled effects of climate change and human activities through a MaxEnt model. The research conclusions are as follows: (i) This study constructs a Human Footprint-MaxEnt (HF-MaxEnt) coupling model. After incorporating human footprint variables, the AUC value of the model increases to 0.914 (from 0.888), demonstrating higher accuracy and reliability. (ii) After incorporating human footprint variables, the predicted area of the model decreases from 2,248,000 km2 to 1,976,000 km2, with the High Suitability experiencing a particularly sharp decline of up to 79.4%, highlighting the significant negative impact of human disturbance on Nitraria tangutorum. (iii) Under the current climate baseline period, solar radiation, precipitation during the wettest season, and mean temperature of the coldest month are the core driving factors for suitable areas of Nitraria tangutorum. (iv) Under future climate scenarios, the potential distribution area of Nitraria tangutorum is significantly positively correlated with carbon emission levels. Under the SSP370 and SSP585 emission pathways, the area of potential distribution reaches 172.24% and 161.3% of that in the current climate baseline period. (v) Under future climate scenarios, the distribution center of potential suitable areas for Nitraria tangutorum shows a dual migration characteristic of “west–south” and “high altitude”, and the mean temperature of the hottest month will become the core constraint factor in the future. This study provides theoretical support and data backing for the delineation of habitat protection areas, population restoration, resource management, and future development prospects for Nitraria tangutorum.