Porcine circoviruses (PCVs) are widely distributed in swine herds. PCV2, the significant swine pathogen, causes infections characterized by growth and development disorders, skin lesions, and respiratory distress. PCV3 has been circulating worldwide and can be associated with various clinical signs and disease developments. Wild boars are the main reservoir of these pathogens in wildlife and can create an alarming threat to pig farming. In Russia, three PCV2 genotypes (PCV2a, PCV2b, and PCV2d) were identified in pig farms. Additionally, PCV3 was observed in pig herds during the monitoring studies in the country. However, data considering the circulation of PCVs in herds of wild boars in Russia is scant. For this purpose, we performed PCR assays of the samples from 30 wild boars hunted in the Moscow Region of Russia in 2021–2023. The ratios of wild boars positive for PCV2, PCV3, or coinfected were 50, 10, and 13.3%, respectively. Additionally, we sequenced 15 PCV2 and four PCV3 complete genomes and conducted phylogenetic analysis, which divided PCV2 isolates into two groups: PCV2d and PCV2b. The study showed a high infection rate of PCV2 among wild boars, with PCV2d dominance. Simultaneously, PCV3 also circulates among wild boars. The obtained results can provide a basis for the development of preventive measures to support infection transmission risks between farm and wild animals.

Porcine parvoviruses (PPVs) are widespread worldwide in the swine population. PPV1 is a significant infectious agent in pig production, causing porcine reproductive failure. The pathogenic potential of novel PPVs has been poorly studied. Since wild boars are a reservoir for PPVs, the aim of this study was to investigate their prevalence and genetic diversity in the wild boar population. Tissue samples (spleen, lungs, and lymph nodes) collected from 108 wild boars from three regions of Russia during 2021–2024 were analyzed. PPV1–7 were found in wild boar populations in Russia, and the most abundant species were PPV7 (59.3%) and PPV3 (49.1%). The research did not reveal any significant relationship between the gender and age of the animals and the prevalence of PPVs. A comparison between the detection rates of PPVs and PCV2/PCV3 revealed the random nature of coinfections. For phylogenetic analysis, complete VP1/VP2 gene sequences of 17 PPV1 isolates were obtained. Most of them belonged to the 27a-like group. Two isolates were in the same cluster as the highly virulent Kresse strain. Isolate BelWB57 had amino acid substitutions that were specific to both the Kresse and 27a-like strains, but it was not classified in either group. Additionally, three sequences for PPV2, PPV3, and PPV7, and one sequence for PPV5 and PPV6 VP1/VP2 genes were obtained. PPV2, PPV3, and PPV7 isolates demonstrated distribution across various clusters with strains from domestic pigs and wild boars from different countries. PPV6 isolate was included in the same clade as the Russian isolate from a domestic pig, whereas PPV5 did not enter any clade with representatives from our country. This is the first work devoted to the study of the PPV1–7 prevalence, as well as the genetic characteristics of isolates circulating among wild boars in various regions of Russia. Our data showed that PPV1–7 is widespread in wild boar populations. Phylogenetic analysis of PPV1 demonstrates a significant prevalence of 27a-like isolates.

Chromobacterium species are common in tropical and subtropical zones in environmental samples according to numerous studies. Here, we describe an environmental case of resident Chromobacterium vaccinii in biofilms associated with Carex spp. roots in Moscow region, Russia (warm-summer humid continental climate zone). We performed broad characterization of individual properties as well as surrounding context for better understanding of the premise of C. vaccinii survival during the winter season. Genome properties of isolated strains propose some insights into adaptation to habit and biofilm mode of life, including social cheaters carrying ΔluxR mutation. Isolated C. vaccinii differs from previously described strains in some biochemical properties and some basic characteristics like fatty acid composition as well as unique genome features. Despite potential to modulate membrane fluidity and presence of several genes responsible for cold shock response, isolated C. vaccinii did not survive during exposure to 4 °C, while in the complex biofilm sample, it was safely preserved for at least half a year in vitro at 4 °C. The surrounding bacterial community within the same biofilm with C. vaccinii represented a series of psychrophilic bacterial species, which may share resistance to low temperatures with other species within biofilm and provide C. vaccinii an opportunity to survive during the cold winter season.

The distribution and genetic diversity of economically significant pathogens, including porcine reproductive and respiratory syndrome virus (PRRSV), porcine circovirus type 2 (PCV2), porcine circovirus type 3 (PCV3), and porcine parvovirus 1 (PPV1), across extensive Russian territory within wild boars that serve as reservoirs remain poorly characterized. This study aimed to conduct a molecular epidemiological survey of these viruses in wild boar populations. The samples of 476 wild boars, collected across Russia between 2021 and 2025, were tested by PCR for the detection of viral genomes. While PRRSV was not detected, we found high detection rates for PCV2 (34.9%), PCV3 (35.5%), and PPV1 (25.4%). For PCV2, the co-circulation of two genotypes, PCV2b (5/53) and PCV2d (48/53), was observed. All 29 PCV3 sequences belonged to the PCV3a genotype. For PPV1, the presence of the PPV1a, PPV1b, and PPV1d genotype, as well as unclassified isolates, was shown. Co-infection of different viruses was detected: PCV2/PCV3 (16.0%), PCV2/PPV1 (6.9%), PCV2/PCV3/PPV1 (6.9%), and PCV3/PPV1 (4.4%). This is the first comprehensive study that demonstrates the wide dissemination and genetic diversity of PCV2, PCV3, and PPV1 within the wild boar population in Russia and highlights their role as a potential reservoir in viral evolution and spread.