Benedicte BAKAN

Dr. Benedicte BAKAN

INRA, Biopolymers Interactions Assemblies Research unit, La Géraudière, 44316 Nantes Cedex 3, France

Research Focus & Metrics

Academic Career Length

12Years (2015-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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27 December 2019 in New Phytologist
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Journal Article
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GPGlenn Philippe
Glenn Philippe
NGNathalie Geneix
Nathalie Geneix
JPJohann Petit
Johann Petit
FGFabienne GUILLON
Fabienne GUILLON
CSChristophe Sandt
Christophe Sandt
BBBenedicte BAKAN
Benedicte BAKAN

24 August 2021 in Waste and Biomass Valorization
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Journal Article
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BBBenedicte BAKAN
Benedicte BAKAN
NBNicolas Bernet
Nicolas Bernet
THEODORE BOUCHEZTHEODORE BOUCHEZ
THEODORE BOUCHEZ
RBRachel Boutrou
Rachel Boutrou
JCJean-Marc Choubert
Jean-Marc Choubert
ATAnne Tremier
Anne Tremier
To move today’s agricultural and urban systems towards tomorrow’s circular economy and respond to climate change, it is imperative to turn organic residues and wastewater into resourceful assets. This article discusses the changes that are needed in research to drive this paradigm shift and to go from a “losses and waste” situation to a “resource and opportunities” ambition. The current lines of research aim to maximise the use and value of biomass or organic residues and wastewater and propose new organisational schemes driven by technical innovations. Exploring the pathways to a sustainable future through many domains let us identify five challenges to structure the research efforts and find circular bioeconomy solutions for organic residues and wastewater: (1) proposing innovative processes and integrated multi-process systems; (2) promoting the emergence of multi-scale and cross-sectoral organisations; (3) developing multi-performance evaluation methods, (4) rethinking research–society intersections, and (5) enhancing research–legislation interactions. We end by outlining prospects for moving forward past current limitations: beyond increasing knowledge, research will continue its own transition. Our responsibility today is not to think about what we could do for a better world but what we should do to make our ever-changing world even better and more sustainable. Graphic Abstract

10 December 2021 in Frontiers in Plant Science
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Journal Article
Open access
NRNicolas Reynoud
Nicolas Reynoud
JPJohann Petit
Johann Petit
CBCécile Bres
Cécile Bres
MLMarc Lahaye
Marc Lahaye
CRChristophe Rothan
Christophe Rothan
BBBenedicte BAKAN
Benedicte BAKAN
Terrestrialization of vascular plants, i.e., Angiosperm, is associated with the development of cuticular barriers that prevent biotic and abiotic stresses and support plant growth and development. To fulfill these multiple functions, cuticles have developed a unique supramolecular and dynamic assembly of molecules and macromolecules. Plant cuticles are not only an assembly of lipid compounds, i.e., waxes and cutin polyester, as generally presented in the literature, but also of polysaccharides and phenolic compounds, each fulfilling a role dependent on the presence of the others. This mini-review is focused on recent developments and hypotheses on cuticle architecture–function relationships through the prism of non-lipid components, i.e., cuticle-embedded polysaccharides and polyester-bound phenolics.

18 November 2017 in Plants
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BBBenedicte BAKAN
Benedicte BAKAN
DMDidier MARION
Didier MARION
Cuticular matrices covering aerial plant organs or delimiting compartments in these organs are composed of an insoluble hydrophobic polymer of high molecular mass, i.e., cutin, that encompass some cell wall polysaccharides and is filled by waxes. Cutin is a polyester of hydroxy and-or epoxy fatty acids including a low amount of glycerol. Screening of Arabidopsis and more recently of tomato (Solanum lycopersicum) mutants allowed the delineation of the metabolic pathway involved in the formation of cutin monomers, as well as their translocation in the apoplast. Furthermore, these studies identified an extracellular enzyme involved in the polymerization of these monomers, i.e., cutin synthase 1 (CUS1), an acyl transferase of the GDSL lipase protein family. By comparing the structure of tomato fruit cutins from wild type and down-regulated CUS1 mutants, as well as with the CUS1-catalyzed formation of oligomers in vitro, hypothetical models can be elaborated on the polymerization of cutins. The polymorphism of the GDSL-lipase family raises a number of questions concerning the function of the different isoforms in relation with the formation of a composite material, the cuticle, containing entangled hydrophilic and hydrophobic polymers, i.e., polysaccharides and cutin, and plasticizers, i.e., waxes.

1 November 2018 in Plant Science
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Journal Article
Open access
ACAnne-Laure Chateigner-Boutin
Anne-Laure Chateigner-Boutin
CLCatherine Lapierre
Catherine Lapierre
CACamille Alvarado
Camille Alvarado
AYArata Yoshinaga
Arata Yoshinaga
CBCécile Barron
Cécile Barron
FGFabienne GUILLON
Fabienne GUILLON
Important biological, nutritional and technological roles are attributed to cell wall polymers from cereal grains. The composition of cell walls in dry wheat grain has been well studied, however less is known about cell wall deposition and modification in the grain outer layers during grain development. In this study, the composition of cell walls in the outer layers of the wheat grain (Triticum aestivum Recital cultivar) was investigated during grain development, with a focus on cell wall phenolics. We discovered that lignification of outer layers begins earlier than previously reported and long before the grain reaches its final size. Cell wall feruloylation increased in development. However, in the late stages, the amount of ferulate releasable by mild alkaline hydrolysis was reduced as well as the yield of lignin-derived thioacidolysis monomers. These reductions indicate that new ferulate-mediated cross-linkages of cell wall polymers appeared as well as new resistant interunit bonds in lignins. The formation of these additional linkages more specifically occurred in the outer pericarp. Our results raised the possibility that stiffening of cell walls occur at late development stages in the outer pericarp and might contribute to the restriction of the grain radial growth.

26 August 2022 in Plant Physiology
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Journal Article
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NRNicolas Reynoud
Nicolas Reynoud
NGNathalie Geneix
Nathalie Geneix
JPJohann Petit
Johann Petit
ADAngelina D'Orlando
Angelina D'Orlando
MFMathieu Fanuel
Mathieu Fanuel
BBBenedicte BAKAN
Benedicte BAKAN
The cuticle is a complex polymer matrix that protects all aerial organs of plants, fulfills multiple roles in plant–environment interactions, and is critical for plant development. These functions are associated with the structural features of cuticles, and the architectural modeling of cuticles during plant development is crucial for understanding their physical properties and biological functions. In this work, the in-depth architecture of the cutin polymer matrix during fruit development was investigated. Using cherry tomato fruit (Solanum lycopersicum) as a model from the beginning of the cell expansion phase to the red ripe stage, we designed an experimental scheme combining sample pretreatment, Raman mapping, multivariate data analyses, and biochemical analyses. These approaches revealed clear chemical areas with different contributions of cutin, polysaccharides, and phenolics within the cutin polymer matrix. Besides, we demonstrated that these areas are finely tuned during fruit development, including compositional and macromolecular rearrangements. The specific spatiotemporal accumulation of phenolic compounds (p-coumaric acid and flavonoids) suggests that they fulfill distinct functions during fruit development. In addition, we highlighted an unexpected dynamic remodeling of the cutin-embedded polysaccharides pectin, cellulose, and hemicellulose. Such structural tuning enables consistent adaption of the cutin-polysaccharide continuum and the functional performance of the fruit cuticle at the different developmental stages. This study provides insights into the plant cuticle architecture and in particular into the organization of the epidermal cell wall-cuticle.