Yagmur Yildizhan

Ms. Yagmur Yildizhan


Research Focus & Metrics

Academic Career Length

10Years (2017-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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22 November 2017 in Sensors
Verified
Journal Article
Open access
PDF file
YYYagmur Yildizhan
Yagmur Yildizhan
NENurdan Erdem
Nurdan Erdem
Monsur IslamMonsur Islam
Monsur Islam
Rodrigo Martinez-DuarteRodrigo Martinez-Duarte
Rodrigo Martinez-Duarte
Meltem ElitasMeltem Elitas
Meltem Elitas
Blood has been the most reliable body fluid commonly used for the diagnosis of diseases. Although there have been promising investigations for the development of novel lab-on-a-chip devices to utilize other body fluids such as urine and sweat samples in diagnosis, their stability remains a problem that limits the reliability and accuracy of readouts. Hence, accurate and quantitative separation and characterization of blood cells are still crucial. The first step in achieving high-resolution characteristics for specific cell subpopulations from the whole blood is the isolation of pure cell populations from a mixture of cell suspensions. Second, live cells need to be purified from dead cells; otherwise, dead cells might introduce biases in the measurements. In addition, the separation and characterization methods being used must preserve the genetic and phenotypic properties of the cells. Among the characterization and separation approaches, dielectrophoresis (DEP) is one of the oldest and most efficient label-free quantification methods, which directly purifies and characterizes cells using their intrinsic, physical properties. In this study, we present the dielectrophoretic separation and characterization of live and dead monocytes using 3D carbon-electrodes. Our approach successfully removed the dead monocytes while preserving the viability of the live monocytes. Therefore, when blood analyses and disease diagnosis are performed with enriched, live monocyte populations, this approach will reduce the dead-cell contamination risk and achieve more reliable and accurate test results.

Verified
Journal Article
Open access
PDF file
YYYagmur Yildizhan
Yagmur Yildizhan
KDKaat Driessens
Kaat Driessens
HTHong Shen Kevin Tsao
Hong Shen Kevin Tsao
RBRobin Boiy
Robin Boiy
DTDebby Thomas
Debby Thomas
DSDragana Spasic
Dragana Spasic
Extracellular vesicles (EVs) have attracted great attention as potential biomarkers for cancer diagnostics. Although several technologies have been developed for EV detection, many of them are still not applicable to clinical settings as they rely on complex EV isolation processes, while lacking sensitivity, specificity or standardization. To solve this problem, we have developed a sensitive breast cancer-specific EV detection bioassay directly in blood plasma using a fiber-optic surface plasmon resonance (FO-SPR) biosensor, previously calibrated with recombinant EVs. First, we established a sandwich bioassay to detect SK-BR-3 EVs by functionalizing the FO-SPR probes with anti-HER2 antibodies. A calibration curve was built using an anti-HER2/Banti-CD9 combination, resulting in an LOD of 2.1 × 107 particles/mL in buffer and 7 × 108 particles/mL in blood plasma. Next, we investigated the potential of the bioassay to detect MCF7 EVs in blood plasma using an anti-EpCAM/Banti-mix combination, obtaining an LOD of 1.1 × 10 8 particles/mL. Finally, the specificity of the bioassay was proven by the absence of signal when testing plasma samples from 10 healthy people unknown to be diagnosed with breast cancer. The remarkable sensitivity and specificity of the developed sandwich bioassay together with the advantages of the standardized FO-SPR biosensor highlight outstanding potential for the future of EV analysis.

6 November 2018 in Electrophoresis
Verified
Journal Article
Closed access
PDF file
Meltem ElitasMeltem Elitas
Meltem Elitas
YYYagmur Yildizhan
Yagmur Yildizhan
MIMonsur Islam
Monsur Islam
RMRodrigo Martinez‐Duarte
Rodrigo Martinez‐Duarte
DODidem Ozkazanc
Didem Ozkazanc

23 February 2021 in Journal of Extracellular Vesicles
Verified
Journal Article
Open access
PDF file
YYYagmur Yildizhan
Yagmur Yildizhan
VVVenkata Suresh Vajrala
Venkata Suresh Vajrala
EGEdward Geeurickx
Edward Geeurickx
CDCharles Declerck
Charles Declerck
NDNevena Duskunovic
Nevena Duskunovic
DSDragana Spasic
Dragana Spasic
Extracellular vesicles (EVs) have drawn huge attention for diagnosing myriad of diseases, including cancer. However, the EV detection and analyses procedures often lack much desired sample standardization. To address this, we used well‐characterized recombinant EVs (rEVs) for the first time as a biological reference material in developing a fiber optic surface plasmon resonance (FO‐SPR) bioassay. In this context, EV binding on the FO‐SPR probes was achieved only with EV‐specific antibodies (e.g. anti‐CD9 and anti‐CD63) but not with non‐specific anti‐IgG. To increase detection sensitivity, we tested six different combinations of EV‐specific antibodies in a sandwich bioassay. Calibration curves were generated with two most effective combinations (anti‐CD9/Banti‐CD81 and anti‐CD63/Banti‐CD9), resulting in 103 and 104 times higher sensitivity than the EV concentration in human blood plasma from healthy or cancer patients, respectively. Additionally, by using anti‐CD63/Banti‐CD9, we detected rEVs spiked in cell culture medium and HEK293 endogenous EVs in the same matrix without any prior EV purification or enrichment. Lastly, we selectively captured breast cancer cell EVs spiked in blood plasma using anti‐EpCAM antibody on the FO‐SPR surface. The obtained results combined with FO‐SPR real‐time monitoring, fast response time and ease of operation, demonstrate its outstanding potential for EV quantification and analysis.

1 April 2017 in International Journal of Engineering Research & Technology
Verified
Journal Article
Closed access
NENurdan Erdem
Nurdan Erdem
YYYagmur Yildizhan
Yagmur Yildizhan
Meltem ElitasMeltem Elitas
Meltem Elitas
SUSabanci University
Sabanci University

3 July 2018 in ACS Omega
Verified
Journal Article
Open access
YYYagmur Yildizhan
Yagmur Yildizhan
UGUmut B. Gogebakan
Umut B. Gogebakan
AAAlara Altay
Alara Altay
MIMonsur Islam
Monsur Islam
Rodrigo Martinez-DuarteRodrigo Martinez-Duarte
Rodrigo Martinez-Duarte
Meltem ElitasMeltem Elitas
Meltem Elitas
Most of the microscopy-based, quantitative assays rely on fluorescent dyes. In this study, we investigated the impact of fluorescent dyes on the dielectrophoretic response of the mammalian cells. The dielectrophoretic measurements were performed to quantify whether the fluorescent dyes alter the dielectrophoretic properties of the cells at single-cell resolution. Our results present that when 10 Vpp electric field is applied, the fluorescent-labeled cells experienced the crossover frequency at 8–10 kHz, whereas the label-free cells exhibited at 16–18 kHz.