Ahmed Abdulkadir

Dr. Ahmed Abdulkadir

orcid

Research Focus & Metrics

Academic Career Length

16Years (2011-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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2 October 2016
Verified
Book Chapter
Closed access
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ÖÇÖzgün Çiçek
Özgün Çiçek
AAAhmed Abdulkadir
Ahmed Abdulkadir
SLSoeren S. Lienkamp
Soeren S. Lienkamp
TBThomas Brox
Thomas Brox
OROlaf Ronneberger
Olaf Ronneberger

1 May 2015 in NeuroImage
Verified
Journal Article
Open access
EBEsther E. Bron
Esther E. Bron
MSMarion Smits
Marion Smits
WFWiesje M. van der Flier
Wiesje M. van der Flier
HVHugo Vrenken
Hugo Vrenken
FBFrederik Barkhof
Frederik Barkhof
SKStefan Klein
Stefan Klein
Algorithms for computer-aided diagnosis of dementia based on structural MRI have demonstrated high performance in the literature, but are difficult to compare as different data sets and methodology were used for evaluation. In addition, it is unclear how the algorithms would perform on previously unseen data, and thus, how they would perform in clinical practice when there is no real opportunity to adapt the algorithm to the data at hand. To address these comparability, generalizability and clinical applicability issues, we organized a grand challenge that aimed to objectively compare algorithms based on a clinically representative multi-center data set. Using clinical practice as the starting point, the goal was to reproduce the clinical diagnosis. Therefore, we evaluated algorithms for multi-class classification of three diagnostic groups: patients with probable Alzheimer's disease, patients with mild cognitive impairment and healthy controls. The diagnosis based on clinical criteria was used as reference standard, as it was the best available reference despite its known limitations. For evaluation, a previously unseen test set was used consisting of 354 T1-weighted MRI scans with the diagnoses blinded. Fifteen research teams participated with a total of 29 algorithms. The algorithms were trained on a small training set (n=30) and optionally on data from other sources (e.g., the Alzheimer's Disease Neuroimaging Initiative, the Australian Imaging Biomarkers and Lifestyle flagship study of aging). The best performing algorithm yielded an accuracy of 63.0% and an area under the receiver-operating-characteristic curve (AUC) of 78.8%. In general, the best performances were achieved using feature extraction based on voxel-based morphometry or a combination of features that included volume, cortical thickness, shape and intensity. The challenge is open for new submissions via the web-based framework: http://caddementia.grand-challenge.org.

1 June 2012 in NeuroImage
Verified
Journal Article
Open access
SKStefan Klöppel
Stefan Klöppel
AAAhmed Abdulkadir
Ahmed Abdulkadir
CJClifford R. Jack
Clifford R. Jack
NKNikolaos Koutsouleris
Nikolaos Koutsouleris
JMJanaina Mourão-Miranda
Janaina Mourão-Miranda
PVPrashanthi Vemuri
Prashanthi Vemuri
Fully automated classification algorithms have been successfully applied to diagnose a wide range of neurological and psychiatric diseases. They are sufficiently robust to handle data from different scanners for many applications and in specific cases outperform radiologists. This article provides an overview of current applications taking structural imaging in Alzheimer's disease and schizophrenia as well as functional imaging to diagnose depression as examples. In this context, we also report studies aiming to predict the future course of the disease and the response to treatment for the individual. This has obvious clinical relevance but is also important for the design of treatment studies that may aim to include a cohort with a predicted fast disease progression to be more sensitive to detect treatment effects. In the second part, we present our own opinions on i) the role these classification methods can play in the clinical setting; ii) where their limitations are at the moment and iii) how those can be overcome. Specifically, we discuss strategies to deal with disease heterogeneity, diagnostic uncertainties, a probabilistic framework for classification and multi-class classification approaches.

1 January 2015 in NeuroImage: Clinical
Verified
Journal Article
Open access
DSDaniel Schmitter
Daniel Schmitter
ARAlexis Roche
Alexis Roche
BMBénédicte Maréchal
Bénédicte Maréchal
DRDelphine Ribes
Delphine Ribes
AAAhmed Abdulkadir
Ahmed Abdulkadir
GKGunnar Krueger
Gunnar Krueger
Voxel-based morphometry from conventional T1-weighted images has proved effective to quantify Alzheimer's disease (AD) related brain atrophy and to enable fairly accurate automated classification of AD patients, mild cognitive impaired patients (MCI) and elderly controls. Little is known, however, about the classification power of volume-based morphometry, where features of interest consist of a few brain structure volumes (e.g. hippocampi, lobes, ventricles) as opposed to hundreds of thousands of voxel-wise gray matter concentrations. In this work, we experimentally evaluate two distinct volume-based morphometry algorithms (FreeSurfer and an in-house algorithm called MorphoBox) for automatic disease classification on a standardized data set from the Alzheimer's Disease Neuroimaging Initiative. Results indicate that both algorithms achieve classification accuracy comparable to the conventional whole-brain voxel-based morphometry pipeline using SPM for AD vs elderly controls and MCI vs controls, and higher accuracy for classification of AD vs MCI and early vs late AD converters, thereby demonstrating the potential of volume-based morphometry to assist diagnosis of mild cognitive impairment and Alzheimer's disease.

17 July 2013 in Alzheimer's & Dementia
Verified
Journal Article
Closed access
JPJessica Peter
Jessica Peter
LSLukas Scheef
Lukas Scheef
AAAhmed Abdulkadir
Ahmed Abdulkadir
HBHenning Boecker
Henning Boecker
MHMichael Heneka
Michael Heneka
AIAlzheimer'S Disease Neuroimaging Initiative
Alzheimer'S Disease Neuroimaging Initiative

1 May 2013 in SLEEP
Verified
Journal Article
Closed access
KSKai Spiegelhalder
Kai Spiegelhalder
WRWolfram Regen
Wolfram Regen
CBChiara Baglioni
Chiara Baglioni
SKStefan Klöppel
Stefan Klöppel
AAAhmed Abdulkadir
Ahmed Abdulkadir
BFBernd Feige
Bernd Feige
S and full research articles published in SLEEP, the official journal of the APSS. Sleep and sleep disorder scientific findings.