Ya Chen

Dr. Ya Chen

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Research Focus & Metrics

Academic Career Length

5Years (2022-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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7 November 2022 in Genes
Verified
Journal Article
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YWYunan Wang
Yunan Wang
PMPeizhen Ma
Peizhen Ma
ZZZhen Zhang
Zhen Zhang
CLCui Li
Cui Li
YLYumeng Liu
Yumeng Liu
HSHao Song
Hao Song
Pleurotomarioidea represents a truly isolated and basally diverging lineage in Vetigastropoda (Mollusca: Gastropoda) whose fossil record can date back to the late Cambrian, thus providing rare insights into the evolutionary history of molluscs. Here, we sequenced and assembled the complete mitochondrial genome of one representative species from Pleurotomarioidea—Entemnotrochus rumphii (Schepman, 1879)—of which the mitogenome is 15,795 bp in length, including 13 protein-coding genes, two ribosomal RNA genes, and 22 transfer RNA genes. The nucleotide composition was biased toward AT, and A + T content reached 65.2%. E. rumphii was recovered as sister to all other living vetigastropods according to mitogenome-based phylogenetic analysis. The mitochondrial gene order was consistent with major vetigastropods and the hypothetical ancestral gastropoda, suggesting the deep conservation of mitogenome arrangement in Vetigastropoda.

19 May 2024 in Genes
Verified
Journal Article
Open access
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YCYa Chen
Ya Chen
CLCui Li
Cui Li
RLRuijing Lu
Ruijing Lu
HWHaiyan Wang
Haiyan Wang
Crassostrea ariakensis (Fujita, 1913) is one of the most important economic and ecological oysters that is naturally distributed along the coast of Asia, separated by the Yangtze River estuary. They are usually compared as different populations, while there is no consensus on whether C. ariakensis in northern and southern areas should be considered as two species or subspecies. Here, we analyzed morphological characteristics, COI, 16s rRNA, mitogenome sequences, and species delimitation analysis (ASAP and PTP) to resolve the intraspecific taxonomic status of the C. ariakensis. Phylogenetic and ASAP analysis highlight that C. ariakensis was divided into N-type and S-type. PTP was unable to differentiate between the two types of C. ariakensis. The divergence time of N-type and S-type C. ariakinsis is estimated to be 1.6 Mya, using the relaxed uncorrelated lognormal clock method. Additionally, significant morphological differences exist between the two groups in terms of the adductor muscle scar color. Despite these differences, the COI (0.6%) and 16S rRNA (0.6%) genetic distance differences between N-type and S-type C. ariakensis has not yet reached the interspecific level. These results suggest that N-type and S-type C. ariakensis should be treated as different subspecies and renamed as C. ariakensis ariakensis subsp. nov and C. ariakensis meridioyangtzensis subsp. nov.

20 January 2025 in Biology
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Journal Article
Open access
PDF file
ZCZang Guo chen
Zang Guo chen
JWJiahui Wang
Jiahui Wang
PMPeizhen Ma
Peizhen Ma
CLCui Li
Cui Li
YCYa Chen
Ya Chen
HWHaiyan Wang
Haiyan Wang
The genus Siphonaria G