Rodrigo Cofre

Dr. Rodrigo Cofre

ENS, CNRS, Paris, Île-de-France, France
orcid

Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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10 November 2021 in Brain Connectivity
Verified
Journal Article
Closed access
MGMarilyn Gatica
Marilyn Gatica
Rodrigo CofreRodrigo Cofre
Rodrigo Cofre
PMPedro A. M. Mediano
Pedro A. M. Mediano
Fernando RosasFernando Rosas
Fernando Rosas
POPatricio Orio
Patricio Orio
JCJesus M. Cortes
Jesus M. Cortes
Background: Brain interdependencies can be studied from either a structural/anatomical perspective (“structural connectivity”) or by considering statistical interdependencies (“functional connectivity” [FC]). Interestingly, while structural connectivity is by definition pairwise (white-matter fibers project from one region to another), FC is not. However, most FC analyses only focus on pairwise statistics and they neglect higher order interactions. A promising tool to study high-order interdependencies is the recently proposed O-Information, which can quantify the intrinsic statistical synergy and the redundancy in groups of three or more interacting variables. Methods: We analyzed functional magnetic resonance imaging (fMRI) data obtained at rest from 164 healthy subjects with ages ranging in 10 to 80 years and used O-Information to investigate how high-order statistical interdependencies are affected by age. Results: Older participants (from 60 to 80 years old) exhibited a higher predominance of redundant dependencies compared with younger participants, an effect that seems to be pervasive as it is evident for all orders of interaction. In addition, while there is strong heterogeneity across brain regions, we found a “redundancy core” constituted by the prefrontal and motor cortices in which redundancy was evident at all the interaction orders studied. Discussion: High-order interdependencies in fMRI data reveal a dominant redundancy in functions such as working memory, executive, and motor functions. Our methodology can be used for a broad range of applications, and the corresponding code is freely available. Impact statement Past research has showcased multiple changes to the brain's structural and functional properties caused by aging. Here we expand prior work through recent advancements in multivariate information theory, which provide richer and more theoretically principled analyses than existing alternatives. We show that the brains of older participants contain more redundant information at multiple spatial scales—that is, activation in different brain regions is less diverse, compared with younger participants—and identify a “redundancy core” constituted by prefrontal and motor cortices, which might explained impaired performance in the old population in functions such as working memory and executive control.

10 September 2020 in Brain Sciences
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Journal Article
Open access
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Rodrigo CofreRodrigo Cofre
Rodrigo Cofre
RHRubén Herzog
Rubén Herzog
PMPedro A. M. Mediano
Pedro A. M. Mediano
JPJuan Ignacio Piccinini
Juan Ignacio Piccinini
Fernando RosasFernando Rosas
Fernando Rosas
ETEnzo Tagliazucchi
Enzo Tagliazucchi
The scope of human consciousness includes states departing from what most of us experience as ordinary wakefulness. These altered states of consciousness constitute a prime opportunity to study how global changes in brain activity relate to different varieties of subjective experience. We consider the problem of explaining how global signatures of altered consciousness arise from the interplay between large-scale connectivity and local dynamical rules that can be traced to known properties of neural tissue. For this purpose, we advocate a research program aimed at bridging the gap between bottom-up generative models of whole-brain activity and the top-down signatures proposed by theories of consciousness. Throughout this paper, we define altered states of consciousness, discuss relevant signatures of consciousness observed in brain activity, and introduce whole-brain models to explore the biophysics of altered consciousness from the bottom-up. We discuss the potential of our proposal in view of the current state of the art, give specific examples of how this research agenda might play out, and emphasize how a systematic investigation of altered states of consciousness via bottom-up modeling may help us better understand the biophysical, informational, and dynamical underpinnings of consciousness.

15 February 2023 in Physical Review E
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Journal Article
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MGMatthieu Gilson
Matthieu Gilson
ETEnzo Tagliazucchi
Enzo Tagliazucchi
Rodrigo CofreRodrigo Cofre
Rodrigo Cofre
Consciousness is supported by complex patterns of brain activity which are indicative of irreversible nonequilibrium dynamics. While the framework of stochastic thermodynamics has facilitated the understanding of physical systems of this kind, its application to infer the level of consciousness from empirical data remains elusive. We faced this challenge by calculating entropy production in a multivariate Ornstein-Uhlenbeck process fitted to Functional magnetic resonance imaging brain activity recordings. To test this approach, we focused on the transition from wakefulness to deep sleep, revealing a monotonous relationship between entropy production and the level of consciousness. Our results constitute robust signatures of consciousness while also advancing our understanding of the link between consciousness and complexity from the fundamental perspective of statistical physics.

11 March 2024 in Nature Communications
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Journal Article
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ALAndrea I. Luppi
Andrea I. Luppi
LULynn Uhrig
Lynn Uhrig
JTJordy Tasserie
Jordy Tasserie
CSCamilo M. Signorelli
Camilo M. Signorelli
ESEmmanuel A. Stamatakis
Emmanuel A. Stamatakis
Rodrigo CofreRodrigo Cofre
Rodrigo Cofre
A central challenge of neuroscience is to elucidate how brain function supports consciousness. Here, we combine the specificity of focal deep brain stimulation with fMRI coverage of the entire cortex, in awake and anaesthetised non-human primates. During propofol, sevoflurane, or ketamine anaesthesia, and subsequent restoration of responsiveness by electrical stimulation of the central thalamus, we investigate how loss of consciousness impacts distributed patterns of structure-function organisation across scales. We report that distributed brain activity under anaesthesia is increasingly constrained by brain structure across scales, coinciding with anaesthetic-induced collapse of multiple dimensions of hierarchical cortical organisation. These distributed signatures are observed across different anaesthetics, and they are reversed by electrical stimulation of the central thalamus, coinciding with recovery of behavioural markers of arousal. No such effects were observed upon stimulating the ventral lateral thalamus, demonstrating specificity. Overall, we identify consistent distributed signatures of consciousness that are orchestrated by specific thalamic nuclei.

17 April 2023 in Scientific Reports
Verified
Journal Article
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RHRubén Herzog
Rubén Herzog
PMPedro A. M. Mediano
Pedro A. M. Mediano
FRFernando E. Rosas
Fernando E. Rosas
PLPaul Lodder
Paul Lodder
RCRobin Carhart-Harris
Robin Carhart-Harris
Rodrigo CofreRodrigo Cofre
Rodrigo Cofre
Psychedelic drugs, including lysergic acid diethylamide (LSD) and other agonists of the serotonin 2A receptor (5HT2A-R), induce drastic changes in subjective experience, and provide a unique opportunity to study the neurobiological basis of consciousness. One of the most notable neurophysiological signatures of psychedelics, increased entropy in spontaneous neural activity, is thought to be of relevance to the psychedelic experience, mediating both acute alterations in consciousness and long-term effects. However, no clear mechanistic explanation for this entropy increase has been put forward so far. We sought to do this here by building upon a recent whole-brain model of serotonergic neuromodulation, to study the entropic effects of 5HT2A-R activation. Our results reproduce the overall entropy increase observed in previous experiments in vivo, providing the first model-based explanation for this phenomenon. We also found that entropy changes were not uniform across the brain: entropy increased in all regions, but the larger effect were localised in visuo-occipital regions. Interestingly, at the whole-brain level, this reconfiguration was not well explained by 5HT2A-R density, but related closely to the topological properties of the brain’s anatomical connectivity. These results help us understand the mechanisms underlying the psychedelic state and, more generally, the pharmacological modulation of whole-brain activity.

2 September 2022 in PLOS Computational Biology
Verified
Journal Article
Open access
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MGMarilyn Gatica
Marilyn Gatica
Fernando RosasFernando Rosas
Fernando Rosas
PMPedro A. M. Mediano
Pedro A. M. Mediano
IDIbai Diez
Ibai Diez
SSStephan P. Swinnen
Stephan P. Swinnen
JCJesus M. Cortes
Jesus M. Cortes
The human brain generates a rich repertoire of spatio-temporal activity patterns, which support a wide variety of motor and cognitive functions. These patterns of activity change with age in a multi-factorial manner. One of these factors is the variations in the brain’s connectomics that occurs along the lifespan. However, the precise relationship between high-order functional interactions and connnectomics, as well as their variations with age are largely unknown, in part due to the absence of mechanistic models that can efficiently map brain connnectomics to functional connectivity in aging. To investigate this issue, we have built a neurobiologically-realistic whole-brain computational model using both anatomical and functional MRI data from 161 participants ranging from 10 to 80 years old. We show that the differences in high-order functional interactions between age groups can be largely explained by variations in the connectome. Based on this finding, we propose a simple neurodegeneration model that is representative of normal physiological aging. As such, when applied to connectomes of young participant it reproduces the age-variations that occur in the high-order structure of the functional data. Overall, these results begin to disentangle the mechanisms by which structural changes in the connectome lead to functional differences in the ageing brain. Our model can also serve as a starting point for modeling more complex forms of pathological ageing or cognitive deficits.