Sucharita Sarkar

Dr. Sucharita Sarkar

Integrative Structural and Computational Biology, The Scripps Research Institute, San Diego, California, USA
orcid

Research Focus & Metrics

Academic Career Length

12Years (2015-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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31 May 2022 in Journal of the American Chemical Society
Verified
Journal Article
Closed access
SSSucharita Sarkar
Sucharita Sarkar
BRBrent Runge
Brent Runge
RRRyan W. Russell
Ryan W. Russell
KMKumar Tekwani Movellan
Kumar Tekwani Movellan
DCDaniel Calero
Daniel Calero
TPTatyana Polenova
Tatyana Polenova

14 May 2018 in The Journal of Physical Chemistry B
Verified
Journal Article
Closed access
MLManman Lu
Manman Lu
SSSucharita Sarkar
Sucharita Sarkar
MWMingzhang Wang
Mingzhang Wang
JKJodi Kraus
Jodi Kraus
MFMatthew Fritz
Matthew Fritz
TPTatyana Polenova
Tatyana Polenova



4 March 2023 in Nature Communications
Verified
Journal Article
Open access
PDF file
SSSucharita Sarkar
Sucharita Sarkar
KZKaneil K. Zadrozny
Kaneil K. Zadrozny
RZRoman Zadorozhnyi
Roman Zadorozhnyi
RRRyan W. Russell
Ryan W. Russell
CQCaitlin M. Quinn
Caitlin M. Quinn
TPTatyana Polenova
Tatyana Polenova
HIV-1 maturation inhibitors (MIs), Bevirimat (BVM) and its analogs interfere with the catalytic cleavage of spacer peptide 1 (SP1) from the capsid protein C-terminal domain (CACTD), by binding to and stabilizing the CACTD-SP1 region. MIs are under development as alternative drugs to augment current antiretroviral therapies. Although promising, their mechanism of action and associated virus resistance pathways remain poorly understood at the molecular, biochemical, and structural levels. We report atomic-resolution magic-angle-spinning NMR structures of microcrystalline assemblies of CACTD-SP1 complexed with BVM and/or the assembly cofactor inositol hexakisphosphate (IP6). Our results reveal a mechanism by which BVM disrupts maturation, tightening the 6-helix bundle pore and quenching the motions of SP1 and the simultaneously bound IP6. In addition, BVM-resistant SP1-A1V and SP1-V7A variants exhibit distinct conformational and binding characteristics. Taken together, our study provides a structural explanation for BVM resistance as well as guidance for the design of new MIs.

13 January 2020 in Molecular Pharmaceutics
Verified
Journal Article
Closed access
JSJochem Struppe
Jochem Struppe
CQCaitlin M. Quinn
Caitlin M. Quinn
SSSucharita Sarkar
Sucharita Sarkar
AGAngela M. Gronenborn
Angela M. Gronenborn
TPTatyana Polenova
Tatyana Polenova