Loren Kocillari

Dr. Loren Kocillari

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Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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26 May 2021 in Proceedings of the National Academy of Sciences
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Journal Article
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LKLoren Kocillari
Loren Kocillari
MOMark E. Olson
Mark E. Olson
SSSamir Suweis
Samir Suweis
RRRodrigo P. Rocha
Rodrigo P. Rocha
ALAlberto Lovison
Alberto Lovison
AMAmos Maritan
Amos Maritan
Significance: For most of its path through plant bodies, water moves in conduits in the wood. Plant water conduction is crucial for Earth’s biogeochemical cycles, making it important to understand how natural selection shapes conduit diameters along the entire lengths of plant stems. Can mathematical modeling and global sampling explain how wood conduits ought to widen from the tip of a plant to its trunk base? This question is evolutionarily important because xylem conduits should widen in a way that keeps water supply constant to the leaves as a plant grows taller. Moreover, selection should act on economy of construction costs of the conducting system. This issue is ecologically important because it helps suggest why climate change alters vegetation height worldwide.

24 October 2018 in Scientific Reports
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Journal Article
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RRRodrigo P. Rocha
Rodrigo P. Rocha
LKLoren Kocillari
Loren Kocillari
SSSamir Suweis
Samir Suweis
MCMaurizio Corbetta
Maurizio Corbetta
AMAmos Maritan
Amos Maritan
Understanding the relationship between large-scale structural and functional brain networks remains a crucial issue in modern neuroscience. Recently, there has been growing interest in investigating the role of homeostatic plasticity mechanisms, across different spatiotemporal scales, in regulating network activity and brain functioning against a wide range of environmental conditions and brain states (e.g., during learning, development, ageing, neurological diseases). In the present study, we investigate how the inclusion of homeostatic plasticity in a stochastic whole-brain model, implemented as a normalization of the incoming node’s excitatory input, affects the macroscopic activity during rest and the formation of functional networks. Importantly, we address the structure-function relationship both at the group and individual-based levels. In this work, we show that normalization of the node’s excitatory input improves the correspondence between simulated neural patterns of the model and various brain functional data. Indeed, we find that the best match is achieved when the model control parameter is in its critical value and that normalization minimizes both the variability of the critical points and neuronal activity patterns among subjects. Therefore, our results suggest that the inclusion of homeostatic principles lead to more realistic brain activity consistent with the hallmarks of criticality. Our theoretical framework open new perspectives in personalized brain modeling with potential applications to investigate the deviation from criticality due to structural lesions (e.g. stroke) or brain disorders.

1 January 2019 in NeuroImage
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Journal Article
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GCGiorgia Cona
Giorgia Cona
LKLoren Kocillari
Loren Kocillari
APAlessandro Palombit
Alessandro Palombit
ABAlessandra Bertoldo
Alessandra Bertoldo
AMAmos Maritan
Amos Maritan
MCMaurizio Corbetta
Maurizio Corbetta
Biological systems carry out multiple tasks in their lifetime, which, in the course of evolution, may lead to trade-offs. In fact phenotypes (different species, individuals within a species, circuits, bacteria, proteins, etc.) cannot be optimal at all tasks, and, according to Pareto optimality theory, lay into a well-defined geometrical distribution (polygons and/or polyhedrons) in the space of traits. The vertices of this distribution contain archetypes, namely phenotypes that are specialists at one of the tasks, whereas phenotypes toward the center of the geometrical distribution show average performance across tasks. We applied this theory to the variability of cognitive and behavioral scores measured in 1206 individuals from the Human Connectome Project. Among all possible combinations of pairs of traits, we found the best fit to Pareto optimality when individuals were plotted in the trait-space of time preferences for reward, evaluated with the Delay Discounting Task (DDT). The DDT measures subjects' preference in choosing either immediate smaller rewards or delayed larger rewards. Time preference for reward was described by a triangular distribution in which each of the three vertices included individuals who used a particular strategy to discount reward. These archetypes accounted for variability on many cognitive, personality, and socioeconomic status variables, as well as differences in brain structure and functional connectivity, with only a weak influence of genetics. In summary, time preference for reward reflects a core variable that biases human phenotypes via natural and cultural selection.

5 December 2023 in Brain Informatics
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LKLoren Kocillari
Loren Kocillari
MCMarco Celotto
Marco Celotto
NFNikolas A. Francis
Nikolas A. Francis
SMShoutik Mukherjee
Shoutik Mukherjee
BBBehtash Babadi
Behtash Babadi
Stefano PanzeriStefano Panzeri
Stefano Panzeri
Measures of functional connectivity have played a central role in advancing our understanding of how information is transmitted and processed within the brain. Traditionally, these studies have focused on identifying redundant functional connectivity, which involves determining when activity is similar across different sites or neurons. However, recent research has highlighted the importance of also identifying synergistic connectivity—that is, connectivity that gives rise to information not contained in either site or neuron alone. Here, we measured redundant and synergistic functional connectivity between neurons in the mouse primary auditory cortex during a sound discrimination task. Specifically, we measured directed functional connectivity between neurons simultaneously recorded with calcium imaging. We used Granger Causality as a functional connectivity measure. We then used Partial Information Decomposition to quantify the amount of redundant and synergistic information about the presented sound that is carried by functionally connected or functionally unconnected pairs of neurons. We found that functionally connected pairs present proportionally more redundant information and proportionally less synergistic information about sound than unconnected pairs, suggesting that their functional connectivity is primarily redundant. Further, synergy and redundancy coexisted both when mice made correct or incorrect perceptual discriminations. However, redundancy was much higher (both in absolute terms and in proportion to the total information available in neuron pairs) in correct behavioural choices compared to incorrect ones, whereas synergy was higher in absolute terms but lower in relative terms in correct than in incorrect behavioural choices. Moreover, the proportion of redundancy reliably predicted perceptual discriminations, with the proportion of synergy adding no extra predictive power. These results suggest a crucial contribution of redundancy to correct perceptual discriminations, possibly due to the advantage it offers for information propagation, and also suggest a role of synergy in enhancing information level during correct discriminations.

14 June 2018 in Scientific Reports
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Journal Article
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LKLoren Kocillari
Loren Kocillari
PFPiero Fariselli
Piero Fariselli
ATAntonio Trovato
Antonio Trovato
FSFlavio Seno
Flavio Seno
Amos MaritanAmos Maritan
Amos Maritan
Proteins have coevolved with cellular environments to improve or preserve their functions, maintaining at the same time the degree of hydrophobicity necessary to fold correctly and enough solubility to perform their biological roles. Here, we study the Escherichia coli proteome using a Pareto front analysis in the solubility-hydrophobicity space. The results indicate the existence of a Pareto optimal front, a triangle whose vertices correspond to archetypal proteins specialized in distinct tasks, such as regulatory processes, membrane transport, outer-membrane pore formation, catalysis, and binding. The vertices are further enriched with proteins that occupy different subcellular compartments, namely, cytoplasmic, inner membrane, outer membrane, and outer membrane bounded periplasmic space. The combination of various enriching features offers an interpretation of how bacteria use the physico-chemical properties of proteins, both to drive them into their final destination in the cell and to have their tasks accomplished.

22 July 2024 in Nature Communications
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Journal Article
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LKLoren Kocillari
Loren Kocillari
SCSilvia Cattelan
Silvia Cattelan
MRMaria Berica Rasotto
Maria Berica Rasotto
FSFlavio Seno
Flavio Seno
Amos MaritanAmos Maritan
Amos Maritan
APAndrea Pilastro
Andrea Pilastro
Sperm length is highly variable across species and many questions about its variation remain open. Although variation in body mass may affect sperm length evolution through its influence on multiple factors, the extent to which sperm length variation is linked to body mass remains elusive. Here, we use the Pareto multi-task evolution framework to investigate the relationship between sperm length and body mass across tetrapods. We find that tetrapods occupy a triangular Pareto front, indicating that trade-offs shape the evolution of sperm length in relation to body mass. By exploring the factors predicted to influence sperm length evolution, we find that sperm length evolution is mainly driven by sperm competition and clutch size, rather than by genome size. Moreover, the triangular Pareto front is maintained within endotherms, internal fertilizers, mammals and birds, suggesting similar evolutionary trade-offs within tetrapods. Finally, we demonstrate that the Pareto front is robust to phylogenetic dependencies and finite sampling bias. Our findings provide insights into the evolutionary mechanisms driving interspecific sperm length variation and highlight the importance of considering multiple trade-offs in optimizing reproductive traits.