Photorespiratory carbon metabolism was long considered as an essentially closed and nonregulated pathway with little interaction to other metabolic routes except nitrogen metabolism and respiration. Most mutants of this pathway cannot survive in ambient air and require CO₂-enriched air for normal growth. Several studies indicate that this CO₂ requirement is very different for individual mutants, suggesting a higher plasticity and more interaction of photorespiratory metabolism as generally thought. To understand this better, we examined a variety of high- and low-level parameters at 1% CO₂ and their alteration during acclimation of wild-type plants and selected photorespiratory mutants to ambient air. The wild type and four photorespiratory mutants of Arabidopsis thaliana (Arabidopsis) were grown to a defined stadium at 1% CO₂ and then transferred to normal air (0.038% CO₂). All other conditions remained unchanged. This approach allowed unbiased side-by-side monitoring of acclimation processes on several levels. For all lines, diel (24 h) leaf growth, photosynthetic gas exchange, and PSII fluorescence were monitored. Metabolite profiling was performed for the wild type and two mutants. During acclimation, considerable variation between the individual genotypes was detected in many of the examined parameters, which correlated with the position of the impaired reaction in the photorespiratory pathway. Photorespiratory carbon metabolism does not operate as a fully closed pathway. Acclimation from high to low CO₂ was typically steady and consistent for a number of features over several days, but we also found unexpected short-term events, such as an intermittent very massive rise of glycine levels after transition of one particular mutant to ambient air. We conclude that photorespiration is possibly exposed to redox regulation beyond known substrate-level effects. Additionally, our data support the view that 2-phosphoglycolate could be a key regulator of photosynthetic-photorespiratory metabolism as a whole.

Tidal estuaries are regarded as highly important ecosystems, mostly due to their high primary productivity and associated role as carbon sinks. In these ecosystems, primary productivity is mainly due to the photosynthetic carbon fixation by phytoplankton and microphytobenthos. The productivity of the two communities has been mostly studied separately, and directly comparable estimates of their carbon fixation rates in the same estuary are relatively scarce. The present study aimed to characterize the spatio-temporal variability of the productivity of phytoplankton and microphytobenthos in a tidal estuary, the Ria de Aveiro (Portugal). The productivity of the two communities was determined using a common methodological approach, based on measurements of in vivo chlorophyll fluorescence, allowing the estimation of the annual ecosystem-level budget for carbon fixation by the two groups. Productivity rates were determined based on synoptic in situ measurements of absolute rates of electron transport rate of photosystem II, using Pulse Amplitude Modulation fluorometry. Chlorophyll fluorescence indices were accompanied by measurements of salinity, temperature, water turbidity, solar irradiance, and planktonic and benthic microalgal biomass. Measurements were carried out hourly, along four spring-neap tidal cycles distributed along 1 year, on three sites of the estuary. The most pronounced trends in the spatio-temporal variability of the photophysiology and productivity of the two communities were the following: (i) maximum biomass and productivity were reached later for microphytobenthos (summer-autumn) than for phytoplankton (spring-summer); (ii) the absorption cross-section of PSII was generally higher for phytoplankton; (iii) the two groups showed a similar photoacclimation state, but microphytobenthos appeared as high light-acclimated when compared to phytoplankton. Biomass-specific productivity was on average higher for phytoplankton than for microphytobenthos, averaging 68.0 and 19.1 mg C mg Chl a^–1 d^–1, respectively. However, areal depth-integrated production rates were generally higher for the microphytobenthos than for the phytoplankton, averaging 264.5 and 140.0 mg C m^–2 d^–1, respectively. On an annual basis, phytoplankton productivity averaged 49.9 g C m^–2 yr^–1 while the productivity of microphytobenthos averaged 105.2 g C m^–2 yr^–1. When upscaling to the whole estuary, annual primary production rates of phytoplankton and microphytobenthos reached 4894.3 and 7534.0 t C yr^–1, respectively, representing 39.4 and 60.6% of the combined total of 12428.3 t C yr^–1 determined for the two communities in the Ria de Aveiro.