Arnald Marcer

Dr. Arnald Marcer

orcid

Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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8 March 2018 in Plant, Cell & Environment
Verified
Journal Article
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DTDaniel Tabas‐Madrid
Daniel Tabas‐Madrid
BMBelén Méndez‐Vigo
Belén Méndez‐Vigo
NANoelia Arteaga
Noelia Arteaga
AMArnald Marcer
Arnald Marcer
APAlberto Pascual‐Montano
Alberto Pascual‐Montano
CACarlos Alonso‐Blanco
Carlos Alonso‐Blanco
Current global change is fueling an interest to understand the genetic and molecular mechanisms of plant adaptation to climate. In particular, altered flowering time is a common strategy for escape from unfavourable climate temperature. In order to determine the genomic bases underlying flowering time adaptation to this climatic factor, we have systematically analysed a collection of 174 highly diverse Arabidopsis thaliana accessions from the Iberian Peninsula. Analyses of 1.88 million single nucleotide polymorphisms provide evidence for a spatially heterogeneous contribution of demographic and adaptive processes to geographic patterns of genetic variation. Mountains appear to be allele dispersal barriers, whereas the relationship between flowering time and temperature depended on the precise temperature range. Environmental genome‐wide associations supported an overall genome adaptation to temperature, with 9.4% of the genes showing significant associations. Furthermore, phenotypic genome‐wide associations provided a catalogue of candidate genes underlying flowering time variation. Finally, comparison of environmental and phenotypic genome‐wide associations identified known (Twin Sister of FT, FRIGIDA‐like 1, and Casein Kinase II Beta chain 1) and new (Epithiospecifer Modifier 1 and Voltage‐Dependent Anion Channel 5) genes as candidates for adaptation to climate temperature by altered flowering time. Thus, this regional collection provides an excellent resource to address the spatial complexity of climate adaptation in annual plants.

14 June 2022 in Ecography
Verified
Journal Article
Open access
AMArnald Marcer
Arnald Marcer
ACArthur D. Chapman
Arthur D. Chapman
JWJohn R. Wieczorek
John R. Wieczorek
FPF. Xavier Picó
F. Xavier Picó
FUFrancesc Uribe
Francesc Uribe
AAArturo H. Ariño
Arturo H. Ariño
Natural history collections (NHCs) represent an enormous and largely untapped wealth of information on the Earth's biota, made available through GBIF as digital preserved specimen records. Precise knowledge of where the specimens were collected is paramount to rigorous ecological studies, especially in the field of species distribution modelling. Here, we present a first comprehensive analysis of georeferencing quality for all preserved specimen records served by GBIF, and illustrate the impact that coordinate uncertainty may have on predicted potential distributions. We used all GBIF preserved specimen records to analyse the availability of coordinates and associated spatial uncertainty across geography, spatial resolution, taxonomy, publishing institutions and collection time. We used three plant species across their native ranges in different parts of the world to show the impact of uncertainty on predicted potential distributions. We found that 38% of the 180+ million records provide coordinates only and 18% coordinates and uncertainty. Georeferencing quality is determined more by country of collection and publishing than by taxonomic group. Distinct georeferencing practices are more determinant than implicit characteristics and georeferencing difficulty of specimens. Availability and quality of records contrasts across world regions. Uncertainty values are not normally distributed but peak at very distinct values, which can be traced back to specific regions of the world. Uncertainty leads to a wide spectrum of range sizes when modelling species distributions, potentially affecting conclusions in biogeographical and climate change studies. In summary, the digitised fraction of the world's NHCs are far from optimal in terms of georeferencing and quality mainly depends on where the collections are hosted. A collective effort between communities around NHC institutions, ecological research and data infrastructure is needed to bring the data on a par with its importance and relevance for ecological research.


27 February 2017 in Plant Biology
Verified
Journal Article
Closed access
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AMArnald Marcer
Arnald Marcer
DVD S Vidigal
D S Vidigal
PJP M A James
P M A James
MFM-J Fortin
M-J Fortin
BMB Méndez-Vigo
B Méndez-Vigo
FPF X Picó
F X Picó

3 December 2020 in Diversity and Distributions
Verified
Journal Article
Open access
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AMArnald Marcer
Arnald Marcer
EHElspeth Haston
Elspeth Haston
QGQuentin Groom
Quentin Groom
AAArturo H. Ariño
Arturo H. Ariño
ACArthur D. Chapman
Arthur D. Chapman
JWJohn R. Wieczorek
John R. Wieczorek
Natural history collections constitute an enormous wealth of information of Life on Earth. It is estimated that over 2 billion specimens are preserved at institutions worldwide, of which less than 10% are accessible via biodiversity data aggregators such as GBIF. Moreover, they are a very important resource for eco‐evolutionary research, which greatly depends on knowing the precise location where the specimens were collected in order to characterize the environment in which they lived. Yet, only about 55% of the accessible records are georeferenced and only 31% have coordinate uncertainty information, which is critical for conducting rigorous studies. The awareness of this gap of knowledge which hinders the enormous potential of such data in research led to the organization of a workshop which brought together key players in georeferencing of natural history collections. The discussion and outcomes of this workshop are here presented.

16 April 2019 in Molecular Ecology Resources
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Journal Article
Open access
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JMJoaquín POLITÈCNICA Martínez-Minaya
Joaquín POLITÈCNICA Martínez-Minaya
DCDavid Conesa
David Conesa
MFMarie-Josée Fortin
Marie-Josée Fortin
CACarlos Alonso‐Blanco
Carlos Alonso‐Blanco
FPF. Xavier Picó
F. Xavier Picó
AMArnald Marcer
Arnald Marcer
Global climate change (GCC) may be causing distribution range shifts in many organisms worldwide. Multiple efforts are currently focused on the development of models to better predict distribution range shifts due to GCC. We addressed this issue by including intraspecific genetic structure and spatial autocorrelation (SAC) of data in distribution range models. Both factors reflect the joint effect of ecoevolutionary processes on the geographical heterogeneity of populations. We used a collection of 301 georeferenced accessions of the annual plant Arabidopsis thaliana in its Iberian Peninsula range, where the species shows strong geographical genetic structure. We developed spatial and nonspatial hierarchical Bayesian models (HBMs) to depict current and future distribution ranges for the four genetic clusters detected. We also compared the performance of HBMs with Maxent (a presence‐only model). Maxent and nonspatial HBMs presented some shortcomings, such as the loss of accessions with high genetic admixture in the case of Maxent and the presence of residual SAC for both. As spatial HBMs removed residual SAC, these models showed higher accuracy than nonspatial HBMs and handled the spatial effect on model outcomes. The ease of modelling and the consistency among model outputs for each genetic cluster was conditioned by the sparseness of the populations across the distribution range. Our HBMs enrich the toolbox of software available to evaluate GCC‐induced distribution range shifts by considering both genetic heterogeneity and SAC, two inherent properties of any organism that should not be overlooked.