Permafrost is widely degraded in the context of global warming. The spatial distribution of soil microbes in these cold habitats has received a lot of attention. However, knowledge on the changes in permafrost microbial communities following permafrost thaw is still limited. We used permafrost soil from a taiga forest for indoor experiments using pristine soil as a control (CK, −2 °C), simulating warming for 15 days at temperatures of 0 °C (T₁), 2 °C (T₂), and 4 °C (T₃). Amplicons of the hypervariable V4 region of the bacterial 16S rRNA gene were sequenced to identify bacterial communities present in the soils of pristine and warming treatments. Warming increased the average relative abundance of Proteobacteria (5.71%) and decreased that of Actinobacteriota (7.82%). The Beta diversity changed (p = 0.001) and significantly correlated with the pH, microbial biomass carbon (MBC), and available potassium (AK) of the soil (p < 0.05). Warming further increased the Alpha diversity (Simpson index), changing the functional pathways of the bacterial communities, whereby secondary functional pathways produced significant correlations with bacterial phyla (p < 0.05). Combined, the results indicated that short-term warming altered the Beta diversity of soil bacteria in a taiga forest’s permafrost soil by decreasing the abundance of Actinobacteria and increasing that of Ascomycetes, while pH, MBC, and AK were identified as the soil factors influencing the structure and diversity of the bacterial communities.

Changes in vegetation type shape the soil microenvironment, thereby regulating the changes in the organic carbon pool by influencing microbial communities and the accumulation of microbial necromass carbon (MNC). This study investigated microbial biomass—via phospholipid fatty acids (PLFAs) analysis—and MNC accumulation across three cold–temperate forest types: Larix gmelinii forest (L), Larix gmelinii–Betula platyphylla Sukaczev mixed forest (LB), and Betula platyphylla Sukaczev forest (B). The results showed that the L had the lowest contents of pH, water content (WC), soil organic carbon (SOC), total nitrogen (TN), available nitrogen (AN), and total phosphorus (TP), but the highest contents of dissolved organic carbon (DOC), available phosphorus (AP), and carbon to nitrogen ratio (C/N) (p < 0.05). LB had the lowest PLFAs content and the highest ratio of Gram-positive bacteria/Gram-negative bacteria (G+/G−), and total fungi/total bacteriai (F/B) of L was the highest. B had the highest alpha diversity index, and significantly positively correlated with pH, SOC, TN, AN, and TP. TP and C/N were the primary elements for significant differences in microbial community structure. The order of MNC content and its contribution to SOC was B > LB > L. MNC was significantly negatively correlated with PLFAs, DOC, and AP, and significantly positively correlated with pH, SOC, TN, AN, TP, Shannon–Wiener and Pielou indices. In conclusion, this study demonstrates that Betula platyphylla Sukaczev forest retains more carbon, nitrogen, and phosphorus, microbial alpha diversity, and acquires more MNC, which can provide a basis for subsequent forest management and carbon sequestration projects.