In this paper an efficient, compact, and cheap power source design for an off-grid PV water pumping system is investigated. The proposed system consists of a PV array, battery, three-port converter (TPC), three-phase voltage source inverter, and induction motor pump. Power is extracted from PV sources during the daytime and used to charge batteries through the three-port converter, then used later to supply load during the nighttime. An intelligent MPPT method is used to obtain PV maximum power; a jellyfish optimization technique with different control algorithms is used to optimize and tune controllers’ parameters among the system. Different modes for the TPC are discussed depending on PV power availability. The proposed system is simulated to assess system performance under different conditions; also the system is efficient with reduced number of components than conventional converters. A complete unified power management over PV input port, battery port, and load port has occurred for all operation modes. At all operation modes, the system has been feeding load without any unmet loads. A real case study in Al-Kharijah oasis is studied and simulation results are listed; for the Dom case DC bus ripple factor voltage percentage equals 0.8%, in the Dim case equals 3%, and in the Siso mode equals 9%.