Neli Kachamakova-Trojanowska

Dr. Neli Kachamakova-Trojanowska

orcid

Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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3 June 2014 in Analytical Chemistry
Verified
Journal Article
Closed access
KMKatarzyna Majzner
Katarzyna Majzner
KKKamila Kochan
Kamila Kochan
NKNeli Kachamakova-Trojanowska
Neli Kachamakova-Trojanowska
EMEdyta Maslak
Edyta Maslak
SCStefan Chlopicki
Stefan Chlopicki
Malgorzata BaranskaMalgorzata Baranska
Malgorzata Baranska

31 October 2012 in The Analyst
Verified
Journal Article
Closed access
PDF file
KMKatarzyna Majzner
Katarzyna Majzner
AKAgnieszka Kaczor
Agnieszka Kaczor
NKNeli Kachamakova-Trojanowska
Neli Kachamakova-Trojanowska
AFAndrzej Fedorowicz
Andrzej Fedorowicz
SCStefan Chlopicki
Stefan Chlopicki
Malgorzata BaranskaMalgorzata Baranska
Malgorzata Baranska
Raman imaging was used to illustrate heterogeneity of a single endothelial cell and the vascular wall sample. The spectral analysis allowed for exploring the complexity of the studied systems in three dimensions and defining the size, volume, shape and biochemical composition of cellular organelles. The ability to construct the 3D maps by a method that does not disrupt the spatial integrity of the cell provided a unique insight into biochemical architecture and cellular processes of endothelium and vascular wall. 3D Raman imaging may be considered as a new trend in analytical spectroscopy to be applied in biomedical research. This method has a potential to be used for medical imaging and diagnostic purposes together with other, already established, imaging techniques.

1 April 2017 in Cell Chemical Biology
Verified
Journal Article
Open access
KMKatarzyna Magiera-Mularz
Katarzyna Magiera-Mularz
MTMarcin Tomala
Marcin Tomala
KKKatarzyna Kubica
Katarzyna Kubica
VCVirginia De Cesare
Virginia De Cesare
MTMatthias Trost
Matthias Trost
LSLukasz Skalniak
Lukasz Skalniak
USP2a is a deubiquitinase responsible for stabilization of cyclin D1, a crucial regulator of cell-cycle progression and a proto-oncoprotein overexpressed in numerous cancer types. Here we report that lithocholic acid (LCA) derivatives are inhibitors of USP proteins, including USP2a. The most potent LCA derivative, LCA hydroxyamide (LCAHA), inhibits USP2a, leading to a significant Akt/GSK3β-independent destabilization of cyclin D1, but does not change the expression of p27. This leads to the defects in cell-cycle progression. As a result, LCAHA inhibits the growth of cyclin D1-expressing, but not cyclin D1-negative cells, independently of the p53 status. We show that LCA derivatives may be considered as future therapeutics for the treatment of cyclin D1-addicted p53-expressing and p53-defective cancer types.

29 November 2020 in Biomolecules
Verified
Journal Article
Open access
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PPPaulina Podkalicka
Paulina Podkalicka
JSJacek Stepniewski
Jacek Stepniewski
OMOlga Mucha
Olga Mucha
NKNeli Kachamakova-Trojanowska
Neli Kachamakova-Trojanowska
JDJózef Dulak
Józef Dulak
ALAgnieszka Loboda
Agnieszka Loboda
Inadequate supply of oxygen (O2) is a hallmark of many diseases, in particular those related to the cardiovascular system. On the other hand, tissue hypoxia is an important factor regulating (normal) embryogenesis and differentiation of stem cells at the early stages of embryonic development. In culture, hypoxic conditions may facilitate the derivation of embryonic stem cells (ESCs) and the generation of induced pluripotent stem cells (iPSCs), which may serve as a valuable tool for disease modeling. Endothelial cells (ECs), multifunctional components of vascular structures, may be obtained from iPSCs and subsequently used in various (hypoxia-related) disease models to investigate vascular dysfunctions. Although iPSC-ECs demonstrated functionality in vitro and in vivo, ongoing studies are conducted to increase the efficiency of differentiation and to establish the most productive protocols for the application of patient-derived cells in clinics. In this review, we highlight recent discoveries on the role of hypoxia in the derivation of ESCs and the generation of iPSCs. We also summarize the existing protocols of hypoxia-driven differentiation of iPSCs toward ECs and discuss their possible applications in disease modeling and treatment of hypoxia-related disorders.

3 March 2020 in Cancers
Verified
Journal Article
Open access
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EBEmilia Białopiotrowicz
Emilia Białopiotrowicz
MNMonika Noyszewska-Kania
Monika Noyszewska-Kania
NKNeli Kachamakova-Trojanowska
Neli Kachamakova-Trojanowska
ALAgnieszka Loboda
Agnieszka Loboda
MCMagdalena Cybulska
Magdalena Cybulska
PJPrzemysław Juszczyński
Przemysław Juszczyński
Burkitt lymphoma (BL) is a rapidly growing tumor, characterized by high anabolic requirements. The MYC oncogene plays a central role in the pathogenesis of this malignancy, controlling genes involved in apoptosis, proliferation, and cellular metabolism. Serine biosynthesis pathway (SBP) couples glycolysis to folate and methionine cycles, supporting biosynthesis of certain amino acids, nucleotides, glutathione, and a methyl group donor, S-adenosylmethionine (SAM). We report that BLs overexpress SBP enzymes, phosphoglycerate dehydrogenase (PHGDH) and phosphoserine aminotransferase 1 (PSAT1). Both genes are controlled by the MYC-dependent ATF4 transcription factor. Genetic ablation of PHGDH/PSAT1 or chemical PHGDH inhibition with NCT-503 decreased BL cell lines proliferation and clonogenicity. NCT-503 reduced glutathione level, increased reactive oxygen species abundance, and induced apoptosis. Consistent with the role of SAM as a methyl donor, NCT-503 decreased DNA and histone methylation, and led to the re-expression of ID4, KLF4, CDKN2B and TXNIP tumor suppressors. High H3K27me3 level is known to repress the MYC negative regulator miR-494. NCT-503 decreased H3K27me3 abundance, increased the miR-494 level, and reduced the expression of MYC and MYC-dependent histone methyltransferase, EZH2. Surprisingly, chemical/genetic disruption of SBP did not delay BL and breast cancer xenografts growth, suggesting the existence of mechanisms compensating the PHGDH/PSAT1 absence in vivo.

1 May 2020 in Biochemical Pharmacology
Verified
Journal Article
Open access
NKNeli Kachamakova-Trojanowska
Neli Kachamakova-Trojanowska
PPPaulina Podkalicka
Paulina Podkalicka
TBTomasz Bogacz
Tomasz Bogacz
SBSzymon Barwacz
Szymon Barwacz
AJAlicja Józkowicz
Alicja Józkowicz
ALAgnieszka Loboda
Agnieszka Loboda
Tumor hypoxia and high activity of hypoxia-inducible factor-1 (HIF-1) correlate with adverse disease outcomes, malignancy, resistance to therapy and metastasis. Nonetheless, recent studies indicate that under certain circumstances, HIF-1 stabilization may exert protective effects and even decrease tumor cell aggressiveness. This study aimed to characterize the potential anticancer effect of molidustat (BAY 85-3934), the prolyl hydroxylase (PHD) inhibitor and HIF-1 stabilizator. We confirmed that molidustat stabilizes HIF-1α and induces the expression of vascular endothelial growth factor (VEGF) in MDA-MB-231 breast cancer cells, to a similar or even greater extent than hypoxia. Interestingly, decreased cell survival and colony formation capabilities, together with S/G2 cell cycle arrest, were observed after treatment with PHD inhibitor. Importantly, molidustat enhanced the effectiveness of the chemotherapeutic drug, gemcitabine, on cancer cells. Finally, the xenograft model revealed decreased tumor growth in vivo after molidustat treatment. Both in vitro and in vivo analysis showed no differences in the angiogenic potential of endothelial cells treated with tumor-conditioned media or vascularization of the MDA-MB-231 xenografts, respectively. In summary, molidustat treatment exhibits an inhibitory effect on breast cancer cell survival, self-renewal capacity and potentiates the efficacy of chemotherapeutic gemcitabine.