Sonja Kubicki

Dr. Sonja Kubicki

orcid

Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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9 July 2019 in Marine Drugs
Verified
Journal Article
Open access
PDF file
SKSonja Kubicki
Sonja Kubicki
ABAlexander Bollinger
Alexander Bollinger
NKNadine Katzke
Nadine Katzke
KJKarl-Erich Jaeger
Karl-Erich Jaeger
ALAnita Loeschcke
Anita Loeschcke
STStephan Thies
Stephan Thies
Biosurfactants are amphiphilic secondary metabolites produced by microorganisms. Marine bacteria have recently emerged as a rich source for these natural products which exhibit surface-active properties, making them useful for diverse applications such as detergents, wetting and foaming agents, solubilisers, emulsifiers and dispersants. Although precise structural data are often lacking, the already available information deduced from biochemical analyses and genome sequences of marine microbes indicates a high structural diversity including a broad spectrum of fatty acid derivatives, lipoamino acids, lipopeptides and glycolipids. This review aims to summarise biosyntheses and structures with an emphasis on low molecular weight biosurfactants produced by marine microorganisms and describes various biotechnological applications with special emphasis on their role in the bioremediation of oil-contaminated environments. Furthermore, novel exploitation strategies are suggested in an attempt to extend the existing biosurfactant portfolio.

23 April 2019 in Microbial Biotechnology
Verified
Journal Article
Open access
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RMRebecka Molitor
Rebecka Molitor
ABAlexander Bollinger
Alexander Bollinger
SKSonja Kubicki
Sonja Kubicki
ALAnita Loeschcke
Anita Loeschcke
KJKarl-Erich Jaeger
Karl-Erich Jaeger
STStephan Thies
Stephan Thies
Summary: Hydrolases acting on polyesters like cutin, polycaprolactone or polyethylene terephthalate ( PET ) are of interest for several biotechnological applications like waste treatment, biocatalysis and sustainable polymer modifications. Recent studies suggest that a large variety of such enzymes are still to be identified and explored in a variety of microorganisms, including bacteria of the genus Pseudomonas . For activity‐based screening, methods have been established using agar plates which contain nanoparticles of polycaprolactone or PET prepared by solvent precipitation and evaporation. In this protocol article, we describe a straightforward agar plate‐based method using emulsifiable artificial polyesters as substrates, namely Impranil ® DLN and liquid polycaprolactone diol ( PLD ). Thereby, the currently quite narrow set of screening substrates is expanded. We also suggest optional pre‐screening with short‐chain and middle‐chain‐length triglycerides as substrates to identify enzymes with lipolytic activity to be further tested for polyesterase activity. We applied these assays to experimentally demonstrate polyesterase activity in bacteria from the P. pertucinogena lineage originating from contaminated soils and diverse marine habitats.

23 August 2022 in Applied and Environmental Microbiology
Verified
Journal Article
Closed access
JCJiaxin Cui
Jiaxin Cui
GHGeorg Hölzl
Georg Hölzl
TKTobias Karmainski
Tobias Karmainski
TTTill Tiso
Till Tiso
SKSonja Kubicki
Sonja Kubicki
PDPeter Dörmann
Peter Dörmann
Alcanivorax borkumensis is one of the most abundant marine bacteria found in areas of oil spills, where it degrades alkanes. The production of a glycine-glucolipid is considered an essential element for alkane degradation.

14 May 2024 in Fermentation
Verified
Journal Article
Open access
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TKTobias Karmainski
Tobias Karmainski
MLMarie K. Lipa
Marie K. Lipa
SKSonja Kubicki
Sonja Kubicki
ABAmina Hadjar Bouchenafa
Amina Hadjar Bouchenafa
STStephan Thies
Stephan Thies
TTTill Tiso
Till Tiso
Biosurfactants are much-discussed alternatives to petro- and oleochemical surfactants. Alcanivorax borkumensis, a marine, Gram-negative γ-proteobacterium, produces a glycine-glucolipid biosurfactant from hydrocarbons, pyruvate, and acetate as carbon sources. Sustainable acetate production from lignocellulose or syngas adds to its relevance for the bioeconomy. This study investigated nitrogen sources and carbon-to-nitrogen ratios (C/N) to optimize fed-batch fermentation for biosurfactant production using A. borkumensis with acetate as the carbon source. Urea enabled high biosurfactant production, which was confirmed in DO-based fed-batch fermentation. Varying C/N ratios led to increased glycine-glucolipid production and decreased biomass production, with improvement plateauing at a C/N ratio of 26.7 Cmol Nmol−1. pH-stat fed-batch fermentation using glacial acetic acid as the carbon source and a pH-adjusting agent doubled the biosurfactant production. Finally, bubble-free membrane aeration was used to prevent extensive foam formation observed during conventional bubble aeration. The efficient production made it possible to investigate the bioactivity of glycine-glucolipid in combination with antibiotics against various microorganisms. Our findings allow for the leverage of glycine-glucolipid biosurfactant production using acetate as a carbon source.

24 August 2018 in Chemie Ingenieur Technik
Verified
Journal Article
Open access
PDF file
SKSonja Kubicki
Sonja Kubicki
RWR. Weihmann
R. Weihmann
IBI. Bator
I. Bator
ADA. Domröse
A. Domröse
ALA. Loeschcke
A. Loeschcke
STStephan Thies
Stephan Thies