We sequenced the complete chloroplast genome of Zanthoxylum acanthopodium via high-throughput sequencing technology, and analyzed its structural characteristics and phylogenetic relationships. The chloroplast exhibits a genome length of 158,473 bp, including a pair of inverted repeat regions (IRa and IRb) of 27,369 bp, a small single-copy (SSC) region of 17,629 bp and a large single-copy (LSC) region of 85,570 bp. The annotation analysis identified 112 genes, containing 78 protein-coding genes, 30 tRNA genes and 4 rRNA genes. The phylogenetic analysis showed that Z. acanthopodium was closely related to Z. piperitum and Z. tragodes.

The widespread application of chemical fertilizers and pesticides has resulted in environmental pollution. With the growing emphasis on ecological agriculture in traditional Chinese medicine, microbial fertilizers are increasingly recognized for their potential. The aim of this study is to investigate the effect of inoculating nitrogen-fixing bacteria on the soil (yellow loam, river sand, and organic fertilizer in a 2:1:1 ratio) of Fritillaria taipaiensis, with a focus on the leaf changes in terms of physiological parameters, antioxidant enzyme activity, and corresponding gene expression levels. The experiment involved three nitrogen-fixing bacteria, namely Rahnella aquatilis, Pseudomonas chlororaphis, and Paenibacillus stellifer, with a total of eight treatment groups. The objective was to assess how these bacterial treatments influenced physiological parameters, photosynthetic characteristics, pigment content, and both antioxidant enzyme activities and gene expression in the leaves of F. taipaiensis. The experimental results demonstrated statistically significant reductions (p < 0.05) in malondialdehyde (MDA) content and stomatal limitation value (LS) in F. taipaiensis leaves under treatment conditions relative to the control group (CK). The most substantial decreases were observed dual-inoculation with R. aquatilis and P. stellifer (N5), showing reductions of 38.24% and 20.94% in MDA and LS compared to CK values. Additionally, leaf area, leaf thickness, stem thickness, plant height, photosynthetic parameters, pigment content, soluble sugars, soluble proteins, proline levels, and the activities of superoxide dismutase (SOD), peroxidase (POD), and catalase (CAT) exhibited varying degrees of increase. Compared to the CK group, the SOD, POD, and CAT activities of the N5 group increased by 141.06%, 160.59%, and 106.23%, respectively. The relative gene expression patterns of SOD, POD, and CAT corresponded with the trends observed in their respective antioxidant enzyme activities. Pearson correlation analysis further demonstrated that leaf area and net photosynthetic rate (Pn) were significantly correlated with respect to SOD, POD, and CAT activities, as well as their corresponding gene expression levels. In conclusion, inoculation with nitrogen-fixing bacteria improved the growth and stress tolerance of F. taipaiensis, with the combined application of Rahnella aquatilis and Pseudomonas stellifer yielding the most effective results. This study establishes that different rhizosphere nitrogen-fixing bacteria, either individually or in combination, influence the photosynthetic characteristics, physiological and biochemical parameters, and protective enzyme systems of F. taipaiensis. These findings provide a theoretical foundation for the selection of nitrogen-fixing bacteria as biofertilizers in the artificial cultivation of F. taipaiensis and highlight their potential application in the cultivation of traditional Chinese medicinal materials.

The complete chloroplast genome of Crotalaria pallida was obtained using the high-throughput sequencing technology in this article. The complete chloroplast genomes of this species were 152,658 bp in length, consisting of a large single-copy region (LSC) of 83,652 bp and a small single-copy region (SSC) of 18,028 bp, which were separated by a pair of inverted repeat (IRs) regions of 25,489 bp. The chloroplast genome contained 111 unique genes, including 77 protein-coding genes, 30 tRNA genes, and four rRNA genes. The phylogenomic relationship analysis suggested that C. pallida was closely related to Lupinus in the family of Leguminosae.

Cotinus coggygria Scop. (Anacardiaceae) is an important ornamental tree with beautiful characteristics that is grown in China. In this study, the complete plastid genome of C. coggygria was sequenced and assembled. This genome was 158,843 bp in size and presented a typical tetrad structure, consisting of a large single-copy region (87,121 bp), a pair of inverted repeat regions (26,829 bp), and a small single-copy region (18,064 bp). A total of 134 genes were annotated, including 88 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. We observed a deletion that caused the loss of the rpl32 gene, and a small expansion of IR regions resulted in the trnH gene accessing IR regions; two copies were obtained. Phylogenetic analysis showed that C. coggygria was most closely related to Pistacia, with 100% bootstrap support within Anacardiaceae. In this study, we report the plastid genome of Cotinus species for the first time, which provides insight into the evolution of the plastid genome in Anacardiaceae and promotes the understanding of Cotinus plants.

Sida szechuensis Matsuda is an economically and medicinally important plant. Here, we report the first chloroplast (cp) genome of the genus Sida (S. szechuensis). The complete cp genome is 159,878 bp in length with an overall GC content of 36.9% and consists of a large single copy region (LSC, 89,426 bp), a small single copy region (SSC, 114,715 bp), and a pair of inverted repeat regions (IRa and IRb, 25,288 bp). The genome encodes 111 unique genes, including 78 protein-coding genes, 29 tRNA genes, 4 rRNA genes, and 1 pseudogene. Phylogenetic analysis constructed using the maximum likelihood (ML) method showed that Sida was closely related to Malvastrum and Malva.

Background: Fritillaria taipaiensis P.Y. Li is commonly used in Chinese medicine for its cough-suppressing and expectorant properties. Due to over-excavation and ecological damage, the wild resources of F. taipaiensis have suffered serious damage. Understanding and improving the inter-root soil environment plays an important role in improving the success rate of artificial cultivation of F. taipaiensis and the quality of medicinal herbs. Methods: This study employed a pot experiment to inoculate three strains of phosphorus-solubilizing fungi from the Aspergillus genus for a total of seven treatment groups, with sterile physiological saline serving as the control group (CK). The research aims to examine the impact of inoculating phosphorus-solubilizing fungi on the biomass of F. taipaiensis, alkaloid concentration in its bulbs, and characteristics of the rhizosphere soil environment. The specific inoculation treatments included: Aspergillus tubingensis (Z1); Aspergillus niger (Z2); Aspergillus fumigatus (Z3); a combination of A. tubingensis and A. niger (Z12); a combination of A. niger and A. fumigatus (Z13); a combination of A. tubingensis and A. fumigatus (Z23); and a combination of all three fungi, A. tubingensis, A. niger, and A. fumigatus (Z123). Results: Inoculation with phosphorus-soluble fungi significantly increased the biomass of F. taipaiensis, and the largest increase was in the Z123 group, which was 62.85% higher than that of the CK group. Total alkaloid content increased the most (0.11%) in the Z3 group, which was an 83.87% increase compared with the CK group. The total content of monomer alkaloids in the Z3, Z13, and Z123 groups increased by 10.53%, 12.48%, and 9.61%, respectively, compared with those in the CK group, indicating that the quality of F. taipaiensis could be significantly improved after applying phosphorus-solubilizing fungi. The soil environment improved after inoculation with different phosphorus-solubilizing fungi. The Z23 and Z123 groups had the greatest effect on the rhizosphere soil bacteria and Actinomyces. Overall, the soil nutrient content of the Z13 group increased the most, and the contents of available phosphorus, available potassium, available nitrogen, total phosphorus, and organic matter increased by 47.71%, 27.36%, 26.78%, 25.13%, and 31.72%, respectively, compared with those in the CK group. Conclusion: These results show that the treatment groups that included different combinations of strains were superior to the single-strain treatment groups, and the Z123 group was the best treatment group when considering bulb biomass and alkaloid and soil nutrient contents. Applying phosphorus-solubilizing fungus fertilizer is highly feasible during F. taipaiensis production in the field.