Jonathan de Bruin

Jonathan de Bruin

orcid

Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 February 2021 in Nature Machine Intelligence
Verified
Journal Article
Open access
PDF file
RSRens Van de Schoot
Rens Van de Schoot
JBJonathan de Bruin
Jonathan de Bruin
RSRaoul Schram
Raoul Schram
PZParisa Zahedi
Parisa Zahedi
JBJan de Boer
Jan de Boer
DODaniel L. Oberski
Daniel L. Oberski
To help researchers conduct a systematic review or meta-analysis as efficiently and transparently as possible, we designed a tool to accelerate the step of screening titles and abstracts. For many tasks—including but not limited to systematic reviews and meta-analyses—the scientific literature needs to be checked systematically. Scholars and practitioners currently screen thousands of studies by hand to determine which studies to include in their review or meta-analysis. This is error prone and inefficient because of extremely imbalanced data: only a fraction of the screened studies is relevant. The future of systematic reviewing will be an interaction with machine learning algorithms to deal with the enormous increase of available text. We therefore developed an open source machine learning-aided pipeline applying active learning: ASReview. We demonstrate by means of simulation studies that active learning can yield far more efficient reviewing than manual reviewing while providing high quality. Furthermore, we describe the options of the free and open source research software and present the results from user experience tests. We invite the community to contribute to open source projects such as our own that provide measurable and reproducible improvements over current practice.

1 October 2018 in Transportation Research Part F: Traffic Psychology and Behaviour
Verified
Journal Article
Closed access
WVWillem Vlakveld
Willem Vlakveld
NNNicole van Nes
Nicole van Nes
JBJonathan de Bruin
Jonathan de Bruin
LVLuuk Vissers
Luuk Vissers
MKMerle van der Kroft
Merle van der Kroft

21 April 2019 in Journal of Transportation Safety & Security
Verified
Journal Article
Open access
MHMarjan Hagenzieker
Marjan Hagenzieker
SKSander van der Kint
Sander van der Kint
LVLuuk Vissers
Luuk Vissers
ISIngrid N. L. G van Schagen
Ingrid N. L. G van Schagen
JBJonathan de Bruin
Jonathan de Bruin
JCJacques J. F. Commandeur
Jacques J. F. Commandeur
Cyclists may have incorrect expectations of the behaviour of automated vehicles in interactions with them, which could bring extra risks in traffic. This study investigated whether expectations and behavioural intentions of cyclists when interacting with automated cars differed from those with manually driven cars. A photo experiment was conducted with 35 participants who judged bicycle–car interactions from the perspective of the cyclist. Thirty photos were presented. An experimental design was used with between-subjects factor instruction (two levels: positive, neutral), and two within-subjects factors: car type (three levels: roof name plate, sticker – these two external features indicated automated cars; and traditional car), and series (two levels: first, second). Participants were asked how sure they were to be noticed by the car shown in the photos, whether the car would stop, and how they would behave themselves. A subset of nine participants was equipped with an eye-tracker. Findings generally point to cautious dispositions towards automated cars: participants were not more confident to be noticed when interacting with both types of automated cars than with manually driven cars. Participants were more confident that automated cars would stop for them during the second series and looked significantly longer at automated cars during the first.

16 September 2020 in OSF Preprints
Verified
Preprint
Open access
GFGerbrich Ferdinands
Gerbrich Ferdinands
RSRaoul Schram
Raoul Schram
JBJonathan de Bruin
Jonathan de Bruin
Ayoub BagheriAyoub Bagheri
Ayoub Bagheri
DODaniel Leonard Oberski
Daniel Leonard Oberski
RSRens Van de Schoot
Rens Van de Schoot
BackgroundConducting a systematic review requires great screening effort. Various tools have been proposed to speed up the process of screening thousands of titles and abstracts by engaging in active learning. In such tools, the reviewer interacts with machine learning software to identify relevant publications as early as possible. To gain a comprehensive understanding of active learning models for reducing workload in systematic reviews, the current study provides a methodical overview of such models. Active learning models were evaluated across four different classification techniques (naive Bayes, logistic regression, support vector machines, and random forest) and two different feature extraction strategies (TF-IDF and doc2vec). Moreover, models were evaluated across six systematic review datasets from various research areas to assess generalizability of active learning models across different research contexts. MethodsPerformance of the models were assessed by conducting simulations on six systematic review datasets. We defined desirable model performance as maximizing recall while minimizing the number of publications needed to screen. Model performance was evaluated by recall curves, WSS@95, RRF@10, and ATD. ResultsWithin all datasets, the model performance exceeded screening at random order to a great degree.The models reduced the number of publications needed to screen by 91.7% to 63.9%. ConclusionsActive learning models for screening prioritization show great potential in reducing the workload in systematic reviews. Overall, the Naive Bayes + TF-IDF model performed the best.

30 April 2024 in Applied Sciences
Verified
Journal Article
Open access
PDF file
PLPeter Lombaers
Peter Lombaers
JBJonathan de Bruin
Jonathan de Bruin
RSRens Van de Schoot
Rens Van de Schoot
In the screening phase of a systematic review, screening prioritization via active learning effectively reduces the workload. However, the PRISMA guidelines are not sufficient for reporting the screening phase in a reproducible manner. Text screening with active learning is an iterative process, but the labeling decisions and the training of the active learning model can happen independently of each other in time. Therefore, it is not trivial to store the data from both events so that one can still know which iteration of the model was used for each labeling decision. Moreover, many iterations of the active learning model will be trained throughout the screening process, producing an enormous amount of data (think of many gigabytes or even terabytes of data), and machine learning models are continually becoming larger. This article clarifies the steps in an active learning-aided screening process and what data is produced at every step. We consider what reproducibility means in this context and we show that there is tension between the desire to be reproducible and the amount of data that is stored. Finally, we present the RDAL Checklist (Reproducibility and Data storage for Active Learning-Aided Systematic Reviews Checklist), which helps users and creators of active learning software make their screening process reproducible.

2 May 2025 in International Journal of Data Science and Analytics
Verified
Journal Article
Open access
PDF file
JTJelle Jasper Teijema
Jelle Jasper Teijema
JBJonathan de Bruin
Jonathan de Bruin
Ayoub BagheriAyoub Bagheri
Ayoub Bagheri
RSRens Van de Schoot
Rens Van de Schoot
Despite progress in active learning, evaluation remains limited by constraints in simulation size, infrastructure, and dataset availability. This study advocates for large-scale simulations as the gold standard for evaluating active learning models in systematic review screening. Two large-scale simulations, totaling over 29 thousand runs, assessed active learning solutions. The first study evaluated 13 combinations of classification models and feature extraction techniques using high-quality datasets from the SYNERGY dataset. The second expanded this to 92 model combinations with additional classifiers and feature extractors. In every scenario tested, active learning outperformed random screening. The performance gained varied across datasets, models, and screening progression, ranging from considerable to near-flawless results. The findings demonstrate that active learning consistently outperforms random screening in systematic review tasks, offering significant efficiency gains. While the extent of improvement varies depending on the dataset, model choice, and screening stage, the overall advantage is clear. Since model performance differs, active learning systems should remain adaptable to accommodate new classifiers and feature extraction techniques. The publicly available results underscore the importance of open benchmarking to ensure reproducibility and the development of robust, generalizable active learning strategies.