Tumor necrosis factor receptor-associated factor (TRAF) proteins play pivotal roles in a multitude of cellular signaling pathways, encompassing immune response, cell fate determination, development, and thrombosis. Their involvement in these processes hinges largely on their ability to interact directly with diverse receptors via the TRAF domain. Given the limited binding interface, understanding how specific TRAF domains engage with various receptors and how structurally similar binding interfaces of TRAF family members adapt their distinct binding partners has been the subject of extensive structural investigations over several decades. This review presents an in-depth exploration of the current insights into the structural and molecular diversity exhibited by the TRAF domain and TRAF-binding motifs across a range of receptors, with a specific focus on TRAF1.
Peptidoglycan digestion by murein-degrading enzymes is a critical process in bacterial cell growth and/or cell division. The membrane-bound lytic murein transglycosylase A (MltA) is a murein-degrading enzyme; it catalyzes the cleavage of the β-1,4-glycosidic linkage between N-acetylmuramic acid and N-acetylglucosamine in peptidoglycans. Although substrate recognition and cleavage by MltA have been examined by previous structural and mutagenesis studies, the overall mechanism of MltA in conjunction with other functionally related molecules on the outer membrane of bacterial cells for peptidoglycan degradation has remained elusive. In this study, the crystal structure of MltA from the virulent human pathogen Acinetobacter baumannii is characterized and presented. The study indicated that MltA from A. baumannii forms homodimers via an extra domain which is specific to this species. Furthermore, the working mechanism of MltA with various functionally related proteins on the bacterial outer membrane was modeled based on the structural and biochemical analysis.
28 July 2020 in Acta Crystallographica Section F Structural Biology Communications
Lytic transglycosylases (LTs) play a central role in bacterial cell wall remodeling by cleaving the β-1,4-glycosidic bond in peptidoglycan via a non-hydrolytic mechanism, producing 1,6-anhydroMurNAc termini crucial for recycling and signaling. Among LTs, membrane-bound lytic transglycosylase B (MltB) contributes to peptidoglycan turnover, antibiotic resistance and protein–protein interactions. Despite its importance, the structural basis of MltB function in Acinetobacter baumannii , a multidrug-resistant pathogen, remains unclear. Here, we report the crystal structure of abMltB at 1.79 Å resolution. abMltB adopts a monomeric structure comprising three domains: an N-terminal domain (NTD), a catalytic domain (CD) and a C-terminal domain (CTD). The NTD connects to the CD via a flexible loop that partially occludes the active site, forming a tunnel-like cavity. Comparative analysis with homologous enzymes such as SltB1 and Slt35 reveals conserved catalytic residues, including Glu129 and key aromatic residues, while the CTD in abMltB adopts a distinct orientation. Notably, although calcium ions stabilize related enzymes, no metal binding was observed in abMltB. These findings highlight conserved mechanistic features and unique structural adaptations of abMltB, offering insight into its functional role in A. baumannii and potential as a novel antimicrobial target.