YUICHIRO KIKUCHI

Dr. YUICHIRO KIKUCHI

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Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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10 January 2023 in Journal of Oral Microbiology
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Journal Article
Open access
YYYukiko Yamaguchi-Kuroda
Yukiko Yamaguchi-Kuroda
YKYUICHIRO KIKUCHI
YUICHIRO KIKUCHI
EKEitoyo Kokubu
Eitoyo Kokubu
KIKazuyuki Ishihara
Kazuyuki Ishihara
Periodontitis is caused by a dysbiotic shift in the dental plaque microbiome. Fusobacterium nucleatum is involved in the colonization of Porphyromonas gingivalis, which plays a key role in dysbiosi...

17 January 2015 in BMC Oral Health
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Journal Article
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SOSatosu Onozawa
Satosu Onozawa
YKYUICHIRO KIKUCHI
YUICHIRO KIKUCHI
KSKazuko Shibayama
Kazuko Shibayama
EKEitoyo Kokubu
Eitoyo Kokubu
MNMasaaki Nakayama
Masaaki Nakayama
HHHiromasa Hasegawa
Hiromasa Hasegawa
Porphyromonas gingivalis has been implicated as a major pathogen in the development and progression of chronic periodontitis. P. gingivalis biofilm formation in the subgingival crevice plays an important role in the ability of the bacteria to tolerate stress signals outside the cytoplasmic membrane. Some bacteria use a distinct subfamily of sigma factors to regulate their extracytoplasmic functions (the ECF subfamily). The objective of this study was to determine if P. gingivalis ECF sigma factors affect P. gingivalis biofilm formation. To elucidate the role of ECF sigma factors in P. gingivalis, chromosomal mutants carrying a disruption of each ECF sigma factor-encoding gene were constructed. Bacterial growth curves were measured by determining the turbidity of bacterial cultures. The quantity of biofilm growing on plates was evaluated by crystal violet staining. Comparison of the growth curves of wild-type P. gingivalis strain 33277 and the ECF mutants indicated that the growth rate of the mutants was slightly lower than that of the wild-type strain. The PGN_0274- and PGN_1740-defective mutants had increased biofilm formation compared with the wild-type (p < 0.001); however, the other ECF sigma factor mutants or the complemented strains did not enhance biofilm formation. These results suggest that PGN_0274 and PGN_1740 play a key role in biofilm formation by P. gingivalis.

20 September 2017 in PLOS ONE
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KFKazutaka Fujise
Kazutaka Fujise
YKYUICHIRO KIKUCHI
YUICHIRO KIKUCHI
EKEitoyo Kokubu
Eitoyo Kokubu
KOKazuko Okamoto-Shibayama
Kazuko Okamoto-Shibayama
KIKazuyuki Ishihara
Kazuyuki Ishihara
Porphyromonas gingivalis is a bacterium frequently isolated from chronic periodontal lesions and is involved in the development of chronic periodontitis. To colonize the gingival crevice, P. gingivalis has to adapt to environmental stresses. Microbial gene expression is regulated by transcription factors such as those in two-component systems and extracytoplasmic function (ECF) sigma factors. ECF sigma factors are involved in the regulation of environmental stress response genes; however, the roles of individual ECF sigma factors are largely unknown. The purpose of this study was to investigate the functions, including autoaggregation, hemagglutination, gingipain activity, susceptibility to antimicrobial agents, and surface structure formation, of P. gingivalis ECF sigma factors encoded by SigP (PGN_0274), SigCH (PGN_0319), PGN_0450, PGN_0970, and SigH (PGN_1740). Various physiological aspects of the sigP mutant were affected; autoaggregation was significantly decreased at 60 min (p < 0.001), hemagglutination activity was markedly reduced, and enzymatic activities of Kgp and Rgps were significantly decreased (p < 0.001). The other mutants also showed approximately 50% reduction in Rgps activity. Kgp activity was significantly reduced in the sigH mutant (p < 0.001). No significant differences in susceptibilities to tetracycline and ofloxacin were observed in the mutants compared to those of the wild-type strain. However, the sigP mutant displayed an increased susceptibility to ampicillin, whereas the PGN_0450 and sigH mutants showed reduced susceptibility. Transmission electron microscopy images revealed increased levels of outer membrane vesicles formed at the cell surfaces of the sigP mutant. These results indicate that SigP is important for bacterial surface-associated activities, including gingipain activity, autoaggregation, hemagglutination, vesicle formation, and antimicrobial susceptibility.

1 January 2010 in The Bulletin of Tokyo Dental College
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KHKaname Hirai
Kaname Hirai
MTMihoko Tomida
Mihoko Tomida
YKYUICHIRO KIKUCHI
YUICHIRO KIKUCHI
OUOhmi Ueda
Ohmi Ueda
HAHiroshi Ando
Hiroshi Ando
NANaokazu Asanuma
Naokazu Asanuma
A complex aggregation of microorganisms growing on a solid substrate is termed a biofilm and is considered to be an etiological agents. Pseudomonas aeruginosa and Streptococcus mutans are representative bacteria in such biofilms. It is well known that deuterium oxide (D2O) causes toxic effects on a number of biological systems. We investigated the effects of D2O on growth and biofilm formation of P. aeruginosa and S. mutans. These bacteria were incubated in medium containing D2O (100%, 75% or 0%) at 37°C for 24hr, 48hr or 72hr. Growth of P. aeruginosa was inhibited by D2O within the first 48hr. However, after 72hr, growth rate was seen to increase in the D2O-containing medium compared with in medium without D2O. In contrast, the growth of S. mutans in the D2O medium was inhibited within 72hr. The biofilm formation of P. aeruginosa was increased in the D2O medium. Biofilm formation of S. mutans in the D2O medium increased compared with in the medium without D2O, but this increase was only temporary in the case of P. aeruginosa. Compared to biofilm formation in 0% D2O medium marked as 100%, the biofilm formation rate of S. mutans in 75% D2O medium was 143% at 24hr, 146% at 48hr and 130% at 72hr. In other D2O concentration media biofilm formation was lower. In 100% D2O medium, biofilm formation rate decreased from 114% at 24hr to 56% at 72hr. The biofilm formation rate of P. aeruginosa in 100% D2O medium was 172% at 24hr, but decreased to 88% at 72hr. Biofilm formation of P. aeruginosa in 75% and 0% D2O media showed no significant difference. We consider that these results were due to stress or alteration in bacterial metabolisms.

1 December 2021 in Anaerobe
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Journal Article
Closed access
YKYUICHIRO KIKUCHI
YUICHIRO KIKUCHI
KOKazuko Okamoto-Shibayama
Kazuko Okamoto-Shibayama
EKEitoyo Kokubu
Eitoyo Kokubu
KIKazuyuki Ishihara
Kazuyuki Ishihara

16 July 2016 in BMC Oral Health
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Journal Article
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KTKimiko Tanaka-Kumazawa
Kimiko Tanaka-Kumazawa
YKYUICHIRO KIKUCHI
YUICHIRO KIKUCHI
YSYumiko Sano-Kokubun
Yumiko Sano-Kokubun
SSSeikou Shintani
Seikou Shintani
MYMasashi Yakushiji
Masashi Yakushiji
KIKazuyuki Ishihara
Kazuyuki Ishihara
Treponema denticola is strongly associated with the development of periodontal disease. Both synergistic and antagonistic effects are observed among bacterial species in the process of biofilm formation. Bacteriocin-related genes have not yet been fully characterized in periodontopathic bacteria. The aim of this study was to detect and characterize bacteriocin-associated proteins in T. denticola. The whole genome sequence of T. denticola ATCC 35405 was screened with a Streptococcus mutans bacteriocin immunity protein (ImmA/Bip) sequence. The prevalence of homologous genes in T. denticola strains was then investigated by Southern blotting. Expression of the genes was evaluated by qRT-PCR. In the genome sequence of T. denticola, an amino acid sequence coded by the open reading frame TDE_0719 showed 26 % identity with the S. mutans ImmA. Furthermore, two protein sequences encoded by TDE_0425 and TDE_2431 in T. denticola ATCC 35405 showed ~40 % identity with that coded by TDE_0719. Therefore, TDE_0425, TDE_0719, and TDE_2431 were designated as tepA1, A2, and A3, respectively. Open reading frames showing similarity to the HlyD family of secretion proteins were detected downstream of tepA1, A2, and A3. They were designated as tepB1, B2, and B3, respectively. A gene harboring a bacteriocin-like signal sequence was detected upstream of tepA1. The prevalence of tepA1 and A2 differed among Treponema species. Susceptibility to chloramphenicol and ofloxacin was slightly decreased in a tepA2 mutant while that to kanamycin was increased. Expression of tepA3-B3 was increased in the tepA2 mutant. These results indicate that T. denticola ATCC 35405 has three potential bacteriocin export proteins and that the presence of these genes differs among the Treponema strains. TepA3-B3 of the corresponding proteins may be involved in resistance to chloramphenicol.