Daniel P Faith

Dr. Daniel P Faith

The Australian Museum, Sydney, Australia

Research Focus & Metrics

Academic Career Length

18Years (2009-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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19 February 2015 in Philosophical Transactions of the Royal Society B: Biological Sciences
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Daniel P FaithDaniel P Faith
Daniel P Faith
The phylogenetic diversity measure, (‘PD’), measures the relative feature diversity of different subsets of taxa from a phylogeny. At the level of feature diversity, PD supports the broad goal of biodiversity conservation to maintain living variation and option values. PD calculations at the level of lineages and features include those integrating probabilities of extinction, providing estimates of expected PD. This approach has known advantages over the evolutionarily distinct and globally endangered (EDGE) methods. Expected PD methods also have limitations. An alternative notion of expected diversity, expected functional trait diversity, relies on an alternative non-phylogenetic model and allows inferences of diversity at the level of functional traits. Expected PD also faces challenges in helping to address phylogenetic tipping points and worst-case PD losses. Expected PD may not choose conservation options that best avoid worst-case losses of long branches from the tree of life. We can expand the range of useful calculations based on expected PD, including methods for identifying phylogenetic key biodiversity areas.

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Daniel P FaithDaniel P Faith
Daniel P Faith
CLCatherine A. Lozupone
Catherine A. Lozupone
DNDavid Nipperess
David Nipperess
RKRob Knight
Rob Knight
The PD measure of phylogenetic diversity interprets branch lengths cladistically to make inferences about feature diversity. PD calculations extend conventional specieslevel ecological indices to the features level. The “phylogenetic beta diversity” framework developed by microbial ecologists calculates PD-dissimilarities between community localities. Interpretation of these PD-dissimilarities at the feature level explains the framework’s success in producing ordinations revealing environmental gradients. An example gradients space using PD-dissimilarities illustrates how evolutionary features form unimodal response patterns to gradients. This features model supports new application of existing species-level methods that are robust to unimodal responses, plus novel applications relating to climate change, commercial products discovery, and community assembly.


1 January 2016
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Daniel P FaithDaniel P Faith
Daniel P Faith
Feature diversity refers to the relative number of different features represented among species or other taxa. As a storehouse of possible future benefits to people, it is an important focus for biodiversity conservation. The PD phylogenetic diversity measure provides a way to measure biodiversity at the level of features. PD assumes an evolutionary model in which shared features are explained by shared ancestry. This avoids philosophical and practical weaknesses of the conventional interpretation of biodiversity as based on some measure of pair-wise differences among taxa. The link to features also provides a family of PD-based calculations that can be interpreted as if we are counting-up features of taxa. The range of feature diversity calculations assists comparisons of methods, and helps overcome the current lack of review and synthesis of the variety of proposed methods for integrating evolutionary history into biodiversity conservation. One family of popular indices is based on the evolutionary distinctiveness (ED) measure. These indices all have the limitation that complementarity, reflecting degree of phylogenetic overlap among taxa, is not properly taken into account. Related indices provide priorities or other scores for geographic areas, but do not effectively combine complementarity, probabilities of extinction, and measures of restricted-range. PD-based measures can overcome these problems. Applications include the identification of key biodiversity sites of global significance for biodiversity conservation.

16 April 2021 in Frontiers in Ecology and Evolution
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Daniel P FaithDaniel P Faith
Daniel P Faith
“Nature’s contributions to people” (NCP) is an important expansion beyond the standard ecosystem services framework, particularly as a pathway to better address global/regional biodiversity values. NCP18, “maintenance of options,” refers broadly to the capacity of ecosystems, habitats, species, or genotypes to keep options open to support a good quality of life. “Biodiversity,” interpreted as living variation, is an important, but under-appreciated, aspect of “maintenance of options.” IPBES refers to “the “option values of biodiversity,” that is, the value of maintaining living variation in order to provide possible future uses and benefits.” IPBES assessments include biodiversity option value, and use phylogenetic diversity (PD) as an indicator of change in status of NCP18. At the same time, IPBES notes the need for greater appreciation of option values of biodiversity. Popular ecosystem services framings forget the long history of consideration of these global benefits of biotic diversity to humanity, and their normative links. Popular ecological definitions mean that many current valuations of “biodiversity” neglect the benefits of biodiversity-as-variety. Economic valuations of “biodiversity” typically have focused on ecosystem aspects, not variety; related ecosystems framings value “biodiversity” with a focus on those critical elements relating to functioning of ecosystems. Greater appreciation of biodiversity option value and NCP18 may depend on clearer messaging from academia, better highlighting of the link between biodiversity and intergenerational justice, and greater communication of stories of past surprising discoveries of benefits from species that highlight biodiversity as an ongoing source of future benefits. An important pathway for better appreciation of insurance and investment benefits of variety is to understand and communicate the reasons why we value these benefits from variety. Biodiversity-as-variety is valued because we care about the welfare of future generations.

1 January 2018 in Ecology and Society
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Daniel P FaithDaniel P Faith
Daniel P Faith
Faith, D. P. 2018. Avoiding paradigm drifts in IPBES: reconciling “nature’s contributions to people,” biodiversity, and ecosystem services. Ecology and Society 23(2):40. https://doi.org/10.5751/ES-10195-230240