Paula Bates

Dr. Paula Bates


Research Focus & Metrics

Academic Career Length

24Years (2003-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 June 2009 in Experimental and Molecular Pathology
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Journal Article
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PBPaula Bates
Paula Bates
DLDamian Abel Laber
Damian Abel Laber
DMDonald M. Miller
Donald M. Miller
STShelia D. Thomas
Shelia D. Thomas
JTJohn O. Trent
John O. Trent

31 October 2010 in Cancer Research
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Journal Article
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ERElsa Reyes-Reyes
Elsa Reyes-Reyes
YTYun Teng
Yun Teng
PBPaula Bates
Paula Bates
AS1411 is a first-in-class anticancer agent, currently in phase II clinical trials. It is a quadruplex-forming oligodeoxynucleotide that binds to nucleolin as an aptamer, but its mechanism of action is not completely understood. Mechanistic insights could lead to clinically useful markers for AS1411 response and to novel targeted therapies. Previously, we proposed a model where cell surface nucleolin serves as the receptor for AS1411, leading to selective uptake in cancer cells. Here, we compare uptake of fluorophore-labeled AS1411 (FL-AS1411) in DU145 prostate cancer cells (sensitive to AS1411) and Hs27 nonmalignant skin fibroblasts (resistant to AS1411). Uptake of FL-AS1411 occurred by endocytosis in both cell types and was much more efficient than an inactive, nonquadruplex oligonucleotide. Unexpectedly, uptake of FL-AS1411 was lower in cancer cells compared with Hs27 cells. However, the mechanism of uptake was different, occurring by macropinocytosis in cancer cells, but by a nonmacropinocytic pathway in Hs27 cells. Additionally, treatment of various cancer cells with AS1411 caused hyperstimulation of macropinocytosis, provoking an increase in its own uptake, whereas no stimulation was observed for nonmalignant cells. Nucleolin was not required for initial FL-AS1411 uptake in DU145 cells but was necessary for induced macropinocytosis and FL-AS1411 uptake at later times. Our results are inconsistent with the previous mechanistic model but confirm that nucleolin plays a role in mediating AS1411 effects. The data suggest a new model for AS1411 action as well as a new role for nucleolin in stimulating macropinocytosis, a process with potential applications in drug delivery. Cancer Res; 70(21); 8617–29. ©2010 AACR.

1 May 2017 in Biochimica et Biophysica Acta (BBA) - General Subjects
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Journal Article
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PBPaula Bates
Paula Bates
ERElsa Reyes-Reyes
Elsa Reyes-Reyes
MMMohammad T. Malik
Mohammad T. Malik
EMEmily M. Murphy
Emily M. Murphy
MOMartin G. O'TOole
Martin G. O'TOole
JTJohn O. Trent
John O. Trent

9 April 2015 in Molecular Oncology
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Journal Article
Open access
ERElsa Reyes-Reyes
Elsa Reyes-Reyes
FŠFrancesca R. Šalipur
Francesca R. Šalipur
MSMitra Shams
Mitra Shams
MFMatthew K. Forsthoefel
Matthew K. Forsthoefel
PBPaula Bates
Paula Bates
AS1411 is a G‐rich quadruplex‐forming oligodeoxynucleotide that binds specifically to nucleolin, a protein found on the surface and in the cytoplasm of most malignant cells but absent from the surface/cytoplasm of most normal cells. AS1411 has shown promising clinical activity and is being widely used as a tumor‐targeting agent, but its mechanism of action is not fully understood. Previously, we showed that AS1411 is taken up in cancer cells by macropinocytosis (fluid phase endocytosis) and subsequently stimulates further macropinocytosis by a nucleolin‐dependent mechanism. In the current study, we have investigated the significance and molecular mechanisms of AS1411‐induced macropinocytosis. Our results indicate that the antiproliferative activity of AS1411 in various cell lines correlated with its capacity to stimulate macropinocytosis. In DU145 prostate cancer cells, AS1411 induced activation of EGFR, Akt, p38, and Rac1. Activation of Akt and p38 were not critical for AS1411 activity because Akt activation was not observed in all AS1411‐responsive cell lines and knockdown of p38 had no effect on AS1411's ability to inhibit proliferation. On the other hand, activation of EGFR and Rac1 appeared to play a role in AS1411 activity in all cancer cell lines examined (DU145, MDA‐MB‐468, A549, LNCaP) and their inhibition significantly reduced AS1411‐mediated macropinocytosis and AS1411 antiproliferative activity. Interestingly, downregulation of nucleolin expression by siRNA also produced a substantial increase in activated Rac1, revealing a previously unknown role for nucleolin as a negative regulator of Rac1 activation. Our results are consistent with a model whereby AS1411 binding to nucleolin leads to sustained activation of Rac1 and causes methuosis, a novel type of nonapoptotic cell death characterized by hyperstimulation of macropinocytosis. We speculate that methuosis is a tumor/metastasis suppressor mechanism that opposes the malignant functions of Rac1 and that cancer cells may overexpress nucleolin to surmount this barrier.

3 June 2015 in Oncotarget
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Journal Article
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MMMohammad T Malik
Mohammad T Malik
MOMartin G. O’tOole
Martin G. O’tOole
LCLavona K. Casson
Lavona K. Casson
STShelia D. Thomas
Shelia D. Thomas
GBGina T. Bardi
Gina T. Bardi
PBPaula Bates
Paula Bates
AS1411-conjugated gold nanospheres and their potential for breast cancer therapy

11 December 2009 in Nucleic Acids Research
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Journal Article
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ECEnid W. Choi
Enid W. Choi
LNLalitha V. Nayak
Lalitha V. Nayak
PBPaula Bates
Paula Bates
Oligodeoxynucleotide libraries containing randomly incorporated bases are used to generate DNA aptamers by systematic evolution of ligands by exponential enrichment (SELEX). We predicted that combinatorial libraries with alternative base compositions might have innate properties different from the standard library containing equimolar A + C + G + T bases. In particular, we hypothesized that G-rich libraries would contain a higher proportion of quadruplex-forming sequences, which may impart desirable qualities, such as increased nuclease resistance and enhanced cellular uptake. Here, we report on 11 synthetic oligodeoxynucleotide libraries of various base combinations and lengths, with regard to their circular dichroism, stability in serum-containing medium, cellular uptake, protein binding and antiproliferative activity. Unexpectedly, we found that some G-rich libraries (composed of G + T or G + C nucleotides) strongly inhibited cancer cell growth while sparing non-malignant cells. These libraries had spectral features consistent with G-quadruplex formation, were significantly more stable in serum than inactive libraries and showed enhanced cellular uptake. Active libraries generally had strong protein binding, while the pattern of protein binding suggested that G/T and G/C libraries have distinct mechanisms of action. In conclusion, cancer-selective antiproliferative activity may be a general feature of certain G-rich oligodeoxynucleotides and is associated with quadruplex formation, nuclease resistance, efficient cellular uptake and protein binding.