Shadrack Kimani

Dr. Shadrack Kimani

orcid

Research Focus & Metrics

Academic Career Length

4Years (2023-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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18 March 2023 in Plant Physiology
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Journal Article
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TBTingting Bao
Tingting Bao
SKShadrack Kimani
Shadrack Kimani
YLYueqing Li
Yueqing Li
HLHongjie Li
Hongjie Li
SYSong Yang
Song Yang
XGXiang Gao
Xiang Gao
Terpene synthases (TPSs) play pivotal roles in conferring the structural diversity of terpenoids, which are mainly emitted from flowers, whereas the genetic basis of the release of floral volatile terpenes remains largely elusive. Though quite similar in sequence, TPS allelic variants still function divergently, and how they drive floral terpene diversity in closely related species remains unknown. Here, TPSs responsible for the floral scent of wild Freesia species were characterized, and the functions of their natural allelic variants, as well as the causal amino acid residues, were investigated in depth. Besides the eight TPSs previously reported in modern cultivars, seven additional TPSs were functionally evaluated to contribute to the major volatiles emitted from wild Freesia species. Functional characterization of allelic natural variants demonstrated that allelic TPS2 and TPS10 variants changed enzymatic capacity while allelic TPS6 variants drove the diversity of floral terpene products. Further residue substitution analysis revealed the minor residues determining the enzyme catalytic activity and product specificity. The clarification of TPSs in wild Freesia species reveals that allelic TPS variants evolved differently to determine the interspecific floral volatile terpenes in the genus and might be used for modern cultivar improvement.

22 August 2025 in Plant Physiology
Verified
Journal Article
Closed access
SYSong Yang
Song Yang
YLYueqing Li
Yueqing Li
NWNing Wang
Ning Wang
SKShadrack Kimani
Shadrack Kimani
TBTingting Bao
Tingting Bao
XGXiang Gao
Xiang Gao
Floral volatile terpenes play pivotal roles in plant-pollinator interactions and ecological adaptation, yet the genetic mechanisms underlying their diversification in Aquilegia remain poorly understood. This study integrates gas chromatography-mass spectrometry (GC/MS) and functional characterization assays to investigate how terpene synthase (TPS) diversity shapes floral scent evolution across Aquilegia species and populations. We identified (+)-limonene, linalool, β-pinene, and β-sesquiphellandrene as the dominant floral terpenes, with substantial inter- and intraspecific variation driven by differential expression and sequence divergence of key TPS genes, including TPS7, TPS8, TPS9 and TPS24. Functional characterization revealed that orthologous variants of TPS7 and TPS8 influence species-specific monoterpene and sesquiterpene production, while TPS24 variants exhibit substrate plasticity in linalool synthesis despite retaining conserved catalytic motifs. Population-level analyses of A. viridiflora revealed that frame-shift mutations and expression shifts in TPSs are associated with terpene profile divergence, while residue variations in allelic TPS variants may have driven functional novelty during evolution. Our findings highlight TPS diversity as a molecular mechanism for floral scent diversification, enabling adaptive radiation through pollinator-mediated selection and specialization within distinct ecological niches. This study provides crucial insights into the evolutionary interplay between genetic variation, enzymatic plasticity, and ecological adaptation in shaping plant biodiversity.

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Journal Article
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AAAdnan Adnan
Adnan Adnan
TBTingting Bao
Tingting Bao
XZXiang Zheng
Xiang Zheng
YPYicong Pang
Yicong Pang
RGRuifang Gao
Ruifang Gao
YLYueqing Li
Yueqing Li
Floral coloration in Freesia hybrida is predominantly attributed to anthocyanins, with glycosylation playing a critical role in their stability and diversity. This study investigates the molecular mechanisms underlying color variation between F. hybrida cultivars, focusing on anthocyanin 5-O-glucosyltransferases (An5GTs). HPLC analysis revealed that ‘Pink Passion’ petals accumulate 3,5-O-diglucosidic anthocyanins, absent in ‘Red River®’ and ‘Ambiance’. RNA-seq identified seven candidate Fh5GT genes, with phylogenetic and subcellular localization analyses confirming their classification as cytosolic glycosyltransferases. Expression profiling highlighted elevated transcript levels of Fh5GT1, Fh5GT3, and Fh5GT7 in ‘Pink Passion’, correlating with its di-glucosidic anthocyanin accumulation. In vitro enzymatic assays demonstrated that Fh5GT3 and Fh5GT7 preferentially glucosylate 3-O-monoglucosidic anthocyanins to form stable 3,5-O-diglucosides, with minimal activity on anthocyanidins to generate 5-O-glucosidic anthocyanins. Heterologous expression of Fh5GT3 and Fh5GT7 in Arabidopsis complemented anthocyanin deficiency in 5gt mutants, restoring pigmentation. These findings elucidate the potential role of 5GTs in modulating floral color diversity through anthocyanin modification, providing insights for targeted breeding strategies to enhance ornamental traits in horticultural species.

20 October 2023 in International Journal of Antimicrobial Agents
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Journal Article
Closed access
MWMilka Wambui Waithera
Milka Wambui Waithera
MSMartin Wekesa Sifuna
Martin Wekesa Sifuna
SKShadrack Kimani
Shadrack Kimani
MTMasahiro Takei
Masahiro Takei

10 June 2024 in Horticulturae
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Journal Article
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SKShadrack Kimani
Shadrack Kimani
SWShuxian Wang
Shuxian Wang
JXJinyi Xie
Jinyi Xie
TBTingting Bao
Tingting Bao
XSXiaotong Shan
Xiaotong Shan
YLYueqing Li
Yueqing Li
Floral scent is an essential and genetically complex trait in herbaceous peonies (Paeonia lactiflora Pall.); however, specific genes related to metabolic and regulatory networks remain scantily studied. Our study integrated metabolite profiling and RNA-sequencing to screen floral scent biosynthetic genes. Hence, the major molecules identified by headspace collection combined with cultivar-specific GC-MS analysis were geraniol, β-caryophyllene, 2-phenylethanol (2-PE), citronellol, and 1,8-cineole. Genes related to terpenoids and 2-PE biosynthesis were identified after the assembly and annotation of the P. lactiflora transcriptomes. Eight angiosperm-specific terpene synthases (TPSs) from the TPS-a and TPS-b clades, as well as enzymes linked to 2-PE synthesis such as aromatic amino acid decarboxylase (AADC), phenylacetaldehyde reductase (PAR), and geranial reductase (GER) were identified. The biochemical analysis of the enzymes encoded by PlPAR1 and PlGER1 generated 2-PE from phenylacetaldehyde (PAld). The pairwise alignment of AADC1 reveals a splice variant lacking a 124 bp fragment, thus highlighting the possible role of alternative splicing in modulating floral scent composition. This study offers insights into the molecular-level biosynthesis of terpenoids and 2-PE in Peonia taxa, and provides the basis for the functional characterization, breeding, and bioengineering of prospective candidate genes for the production of floral volatiles in the Paeonia genus.

9 March 2026 in Horticulture Research
Verified
Journal Article
Open access
TBTingting Bao
Tingting Bao
SKShadrack Kimani
Shadrack Kimani
XSXiaotong Shan
Xiaotong Shan
HLHongjie Li
Hongjie Li
LLLuhong Leng
Luhong Leng
XGXiang Gao
Xiang Gao
Volatile terpenes constitute a predominant class of floral scent emitted by Paeonia lactiflora. Despite their ecological and economical significance, the genetic blueprint of the underlying biosynthetic pathway remains poorly elucidated. Although a few terpene synthase (TPS) genes have been reported, the broader network of genes orchestrating terpene production in P. lactiflora is still largely unresolved. In this study, we attempted to address this gap by exploring the terpene biosynthetic pathway genes in P. lactiflora ‘Zifengyu’. β-caryophyllene, geraniol, citronellol, and 1, 8-cineole were identified as the dominant floral terpenes, and catalytic functions of key proteins—terpene synthase (PlTPS), Nudix hydrolase (PlNUDX), and prenyltransferase (PlPT) were comprehensively characterized. Briefly, biochemical analyses revealed that six of the nine identified PlTPS proteins utilized diverse prenyl diphosphates to generate both monoterpenes and sesquiterpenes, while their products specificity were determined by plastidic or cytosolic localizations in planta. In particular, PlTPS4, PlTPS5, and PlTPS9 catalyzed the production of β-caryophyllene, 1, 8-cineole, and geraniol, respectively. Besides, two amino acid residues were found to drive catalytic activity and product profiles in PlTPS4 and PlTPS5. Markedly, PlNUDX hydrolyzed GPP and NPP to yield geraniol and nerol thereby providing a plastid-independent pathway for monoterpene biosynthesis, and prenyltransferases were further functionally characterized to clarify the supply of prenyl diphosphates feeding into volatile terpenes. Collectively, these findings not only provide a mechanistic framework for understanding floral terpene biosynthesis in P. lactiflora but also reveal alternative metabolic routes that enrich its volatile profiles that could be utilized in scent improvement of ornamental plants.