Thomas von Rintelen

Dr. Thomas von Rintelen

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Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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6 September 2021 in Cladistics
Verified
Journal Article
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RMRudolf Meier
Rudolf Meier
BBBonnie B. Blaimer
Bonnie B. Blaimer
EBEliana Buenaventura
Eliana Buenaventura
EHEmily Hartop
Emily Hartop
TRThomas von Rintelen
Thomas von Rintelen
DYDarren Yeo
Darren Yeo
Halting biodiversity decline is one of the most critical challenges for humanity, but monitoring biodiversity is hampered by taxonomic impediments. One impediment is the large number of undescribed species (here called “dark taxon impediment”) whereas another is caused by the large number of superficial species descriptions, that can only be resolved by consulting type specimens (“superficial description impediment”). Recently, Sharkey et al. (2021) proposed to address the dark taxon impediment for Costa Rican braconid wasps by describing 403 species based on COI barcode clusters (“BINs”) computed by BOLD Systems. More than 99% of the BINs (387 of 390) were converted into species by assigning binominal names (e.g. BIN “BOLD:ACM9419” becomes Bracon federicomatarritai) and adding a minimal diagnosis (consisting only of a consensus barcode for most species). We here show that many of Sharkey et al.’s species are unstable when the underlying data are analyzed using different species delimitation algorithms. Add the insufficiently informative diagnoses, and many of these species will become the next “superficial description impediment” for braconid taxonomy because they will have to be tested and redescribed after obtaining sufficient evidence for confidently delimiting species. We furthermore show that Sharkey et al.’s approach of using consensus barcodes as diagnoses is not functional because it cannot be applied consistently. Lastly, we reiterate that COI alone is not suitable for delimiting and describing species, and voice concerns over Sharkey et al.’s uncritical use of BINs because they are calculated by a proprietary algorithm (RESL) that uses a mixture of public and private data. We urge authors, reviewers and editors to maintain high standards in taxonomy by only publishing new species that are rigorously delimited with open‐access tools and supported by publicly available evidence.

4 December 2021 in Molecular Ecology Resources
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Journal Article
Open access
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LWLorenz Wührl
Lorenz Wührl
CPChristian Pylatiuk
Christian Pylatiuk
MGMatthias Giersch
Matthias Giersch
FLFlorian Lapp
Florian Lapp
TRThomas von Rintelen
Thomas von Rintelen
RMRudolf Meier
Rudolf Meier
Invertebrate biodiversity remains poorly understood although it comprises much of the terrestrial animal biomass, most species and supplies many ecosystem services. The main obstacle is specimen‐rich samples obtained with quantitative sampling techniques (e.g., Malaise trapping). Traditional sorting requires manual handling, while molecular techniques based on metabarcoding lose the association between individual specimens and sequences and thus struggle with obtaining precise abundance information. Here we present a sorting robot that prepares specimens from bulk samples for barcoding. It detects, images and measures individual specimens from a sample and then moves them into the wells of a 96‐well microplate. We show that the images can be used to train convolutional neural networks (CNNs) that are capable of assigning the specimens to 14 insect taxa (usually families) that are particularly common in Malaise trap samples. The average assignment precision for all taxa is 91.4% (75%–100%). This ability of the robot to identify common taxa then allows for taxon‐specific subsampling, because the robot can be instructed to only pick a prespecified number of specimens for abundant taxa. To obtain biomass information, the images are also used to measure specimen length and estimate body volume. We outline how the DiversityScanner can be a key component for tackling and monitoring invertebrate diversity by combining molecular and morphological tools: the images generated by the robot become training images for machine learning once they are labelled with taxonomic information from DNA barcodes. We suggest that a combination of automation, machine learning and DNA barcoding has the potential to tackle invertebrate diversity at an unprecedented scale.

6 April 2021 in BMC Ecology and Evolution
Verified
Journal Article
Open access
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ETEmmanuel F. A. Toussaint
Emmanuel F. A. Toussaint
LWLloyd White
Lloyd White
HSHelena Shaverdo
Helena Shaverdo
ALAthena Lam
Athena Lam
SSSuriani Surbakti
Suriani Surbakti
MBMichael Balke
Michael Balke
Background: The New Guinean archipelago has been shaped by millions of years of plate tectonic activity combined with long-term fluctuations in climate and sea level. These processes combined with New Guinea’s location at the tectonic junction between the Australian and Pacific plates are inherently linked to the evolution of its rich endemic biota. With the advent of molecular phylogenetics and an increasing amount of geological data, the field of New Guinean biogeography begins to be reinvigorated. Results: We inferred a comprehensive dated molecular phylogeny of endemic diving beetles to test historical hypotheses pertaining to the evolution of the New Guinean biota. We used geospatial analysis techniques to compare our phylogenetic results with a newly developed geological terrane map of New Guinea as well as the altitudinal and geographic range of species (https://arcg.is/189zmz). Our divergence time estimations indicate a crown age (early diversification) for New Guinea Exocelina beetles in the mid-Miocene ca. 17 Ma, when the New Guinean orogeny was at an early stage. Geographic and geological ancestral state reconstructions suggest an origin of Exocelina ancestors on the eastern part of the New Guinean central range on basement rocks (with a shared affinity with the Australian Plate). Our results do not support the hypothesis of ancestors migrating to the northern margin of the Australian Plate from Pacific terranes that incrementally accreted to New Guinea over time. However, our analyses support to some extent a scenario in which Exocelina ancestors would have been able to colonize back and forth between the amalgamated Australian and Pacific terranes from the Miocene onwards. Our reconstructions also do not support an origin on ultramafic or ophiolite rocks that have been colonized much later in the evolution of the radiation. Macroevolutionary analyses do not support the hypothesis of heterogeneous diversification rates throughout the evolution of this radiation, suggesting instead a continuous slowdown in speciation. Conclusions: Overall, our geospatial analysis approach to investigate the links between the location and evolution of New Guinea’s biota with the underlying geology sheds a new light on the patterns and processes of lineage diversification in this exceedingly diverse region of the planet.

10 October 2017 in Biodiversity Data Journal
Verified
Journal Article
Open access
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NSNano Suprayitno
Nano Suprayitno
RNRaden Pramesa Narakusumo
Raden Pramesa Narakusumo
TRThomas von Rintelen
Thomas von Rintelen
LHLars Hendrich
Lars Hendrich
MBMichael Balke
Michael Balke
Taxonomy and biogeography can benefit from citizen scientists. The use of social networking and open access cooperative publishing can easily connect naturalists even in more remote areas with in-country scientists and institutions, as well as those abroad. This enables taxonomic efforts without frontiers and at the same time adequate benefit sharing measures. We present new distribution and habitat data for diving beetles of Bali island, Indonesia, as a proof of concept. The species Hydaticus luczonicus Aubé, 1838 and Eretes griseus (Fabricius, 1781) are reported from Bali for the first time. The total number of Dytiscidae species known from Bali is now 34.

27 September 2021 in Biodiversity Data Journal
Verified
Journal Article
Open access
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DTDo Van Tu
Do Van Tu
KRKristina von Rintelen
Kristina von Rintelen
WKWerner Klotz
Werner Klotz
LALe Hung Anh
Le Hung Anh
TTTran Anh Tuan
Tran Anh Tuan
TRThomas von Rintelen
Thomas von Rintelen
Freshwater shrimp of the family Atyidae De Haan, 1849 have been studied in Vietnam for more than a century. A total of 24 species of atyid shrimps from the generaCaridinaH. Milne Edwards, 1837,NeocaridinaKubo, 1938,AtyopsisChace, 1983 have been recorded from Vietnam. With 22 species, the majority are from the genusCaridina. In 2013, Karge and Klotz mentioned the occurrence of four yet undescribed species belonging toParacaridinaLiang, Guo & Tang, 1999 in Vietnam without taxonomic details.In general, studies of freshwater atyids in Vietnam are limited and most Vietnamese taxa await a taxonomic revision. The available data do not fully reflect their estimated species diversity in the country and distribution data are deficient. Here, we focus on four species of atyid shrimps from two genera, viz.Caridina cantonensisYu, 1938,C. lanceifronsYu, 1936,C. serrataStimpson, 1860 andNeocaridina palmata(Shen, 1948), all described from China and have been reported to occur in Vietnam. The previous reports on the occurrence of these species in Vietnam are largely unreliable due to taxonomic confusion. To contribute to the knowledge of these taxa, we provide the first verified distribution records of the four species in the country with some taxonomic remarks.This study shows the first taxonomically-verified distribution data of four atyid shrimp species originally described from China, but also reported from Vietnam, albeit under various species names and, in some cases, erroneously. These data allow the first meaningful discussion of the distribution in light of the reproductive strategy of these four species and, in conjunction with the taxonomic remarks, will contribute to the knowledge of these taxa. As a result of this research and data from previous studies, we now consider all four species as widespread and non-endemic, but land-locked (with a complete freshwater life cycle). In Vietnam, all four species are confined to the northern half of the country. Beyond Vietnam, we provide the first records forCaridina lanceifronsfrom southern Thailand, which suggests a major sampling gap in Indochina.

22 February 2021 in Zootaxa
Verified
Journal Article
Closed access
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DTDo Van Tu
Do Van Tu
CTCao Thi Kim Thu
Cao Thi Kim Thu
TRThomas von Rintelen
Thomas von Rintelen
The first stygobitic species of atyid freshwater shrimps from Vietnam is described from Cuc Phuong National Park, Northern Vietnam. Caridina thachlam sp. nov. can be distinguished from its congeners by a suite of morphological characters such as strongly reduced eyes without eyestalk, short and almost unarmed rostrum and slender pereiopods. Molecular phylogenetic data from the mitochondrial cytochrome oxidase subunit I (COI) and 16S ribosomal RNA genes also support the distinctiveness of the new species from all other species that we have examined.