Xin-Jie Jin

Dr. Xin-Jie Jin

orcid

Research Focus & Metrics

Academic Career Length

5Years (2022-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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25 January 2023 in Planta
Verified
Journal Article
Closed access
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HQHe Qiu
He Qiu
ZZZhi-Hui Zhang
Zhi-Hui Zhang
MWMei-Zhen Wang
Mei-Zhen Wang
XJXin-Jie Jin
Xin-Jie Jin
JLJie-Dong Lin
Jie-Dong Lin
PLPan Li
Pan Li

15 January 2024 in Genes
Verified
Journal Article
Open access
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YHYing Han
Ying Han
YFYanlei Feng
Yanlei Feng
JWJie Wang
Jie Wang
SZShanshan Zhu
Shanshan Zhu
XJXin-Jie Jin
Xin-Jie Jin
YZYong-Hua Zhang
Yong-Hua Zhang
Rehmannia chingii is an important medicinal plant with immense value in scientific research. However, its mitochondrial genome (mitogenome) has not yet been characterized. Herein, based on whole-genome Illumina short reads and PacBio HiFi reads, we obtained the complete mitogenome of R. chingii through a de novo assembly strategy. We carried out comparative genomic analyses and found that, in comparison with the plastid genome (plastome) showing a high degree of structural conservation, the R. chingii mitogenome structure is relatively complex, showing an intricate ring structure with 16 connections, owing to five repetitive sequences. The R. chingii mitogenome was 783,161 bp with a GC content of 44.8% and contained 77 genes, comprising 47 protein-coding genes (CDS), 27 tRNA genes, and 3 rRNA genes. We counted 579 RNA editing events in 47 CDS and 12,828 codons in all CDSs of the R. chingii mitogenome. Furthermore, 24 unique sequence transfer fragments were found between the mitogenome and plastome, comprising 8 mitogenome CDS genes and 16 plastome CDS genes, corresponding to 2.39% of the R. chingii mitogenome. Mitogenomes had shorter but more collinear regions, evidenced by a comparison of the organelles of non-parasitic R. chingii, hemiparasitic Pedicularis chinensis, and holoparasitic Aeginetia indica in the Orobanchaceae family. Moreover, from non-parasitic to holoparasitic species, the genome size in the mitogenomes of Orobanchaceae species did not decrease gradually. Instead, the smallest mitogenome was found in the hemiparasitic species P. chinensis, with a size of 225,612 bp. The findings fill the gap in the mitogenome research of the medicinal plant R. chingii, promote the progress of the organelle genome research of the Orobanchaceae family, and provide clues for molecular breeding.

18 February 2025 in Cladistics
Verified
Journal Article
Closed access
XJXin-Jie Jin
Xin-Jie Jin
YYYan Yu
Yan Yu
HLHan‐Yang Lin
Han‐Yang Lin
FLFeng‐Luan Liu
Feng‐Luan Liu
HWHai‐Feng Wang
Hai‐Feng Wang
PLPan Li
Pan Li

12 July 2023 in Ecology and Evolution
Verified
Journal Article
Open access
YHYue Huang
Yue Huang
QMQing Ma
Qing Ma
JSJing Sun
Jing Sun
LZLi‐Na Zhou
Li‐Na Zhou
CLChan‐Juan Lai
Chan‐Juan Lai
YZYong-Hua Zhang
Yong-Hua Zhang
Diospyros (Ebenaceae) is a widely distributed genus of trees and shrubs from pantropical to temperate regions, with numerous species valued for their fruits (persimmons), timber, and medicinal values. However, information regarding their plastomes and chloroplast evolution is scarce. The present study performed comparative genomic and evolutionary analyses on plastomes of 45 accepted Diospyros species, including three newly sequenced ones. Our study showed a highly conserved genomic structure across the Diospyros species, with 135–136 encoding genes, including 89 protein‐coding genes, 1–2 pseudogenes (Ψycf1 for all, Ψrps19 for a few), 37 tRNA genes and 8 rRNA genes. Comparative analysis of Diospyros identified three intergenic regions (ccsA‐ndhD, rps16‐psbK and petA‐psbJ) and five genes (rpl33, rpl22, petL, psaC and rps15) as the mutational hotspots in these species. Phylogenomic analysis identified the phylogenetic position of three newly sequenced ones and well supported a monophylogenetic (sub)temperate taxa and four clades in the pantropical taxa. The analysis codon usage identified 30 codons with relative synonymous codon usage (RSCU) values >1 and 29 codons ending with A and U bases. A total of three codons (UUA, GCU, and AGA) with highest RSCU values were identified as the optimal codons. Effective number of codons (ENC)‐plot indicated the significant role of mutational pressure in shaping codon usage, while most protein‐coding genes in Diospyros experienced relaxed purifying selection (dN/dS < 1). Additionally, the psbH gene showed positive selection (dN/dS > 1) in the (sub)temperate species. Thus, the results provide a meaningful foundation for further elaborating Diospyros's genetic architecture and taxonomy, enriching genetic diversity and conserving genetic resources.

19 January 2026 in PhytoKeys
Verified
Journal Article
Open access
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MWMeizhen Wang
Meizhen Wang
JLJiedong Lin
Jiedong Lin
BLBoheng Li
Boheng Li
JLJunlong Li
Junlong Li
XJXin-Jie Jin
Xin-Jie Jin
PLPan Li
Pan Li
Impatiens tainingensis J.-D.Lin & P.Li, sp. nov. , is described and illustrated. It was collected from a moist valley of Mt. Zhuangyuanyan, Fujian Province, in Southeastern China. It resembles Impatiens platysepala Y.L. Chen, I. kuocangshanica (X.F. Jin & F.G. Zhang) X.F. Jin & Y.L. Xu and I. huangyanensis subsp. attenuata X.F. Jin & Z.H. Chen in the gross morphology of their pinkish purple flowers but differs in having smaller lateral sepals, subsaccate-funnel form lower sepals, shorter spurs, and capsules. The molecular phylogeny of Impatiens based on plastome and ITS sequences indicated that I. tainingensis is closely related to I. platysepala and I. wuyiensis J.S. Wang, Y.F. Lu & X.F. Jin, but morphology, phylogeny, and plastome structural variation comparison provide evidence for recognizing it as a distinct species.

11 April 2022 in Plants
Verified
Journal Article
Open access
PDF file
JFJieYing Feng
JieYing Feng
XJXin-Jie Jin
Xin-Jie Jin
SZSheng-Lu Zhang
Sheng-Lu Zhang
JYJia-Wen Yang
Jia-Wen Yang
SFShi-Peng Fei
Shi-Peng Fei
PLPan Li
Pan Li
A new species, Smilax weniae (Smilacaceae), from Southwest China, is described and illustrated. The new species bears peltate leaves, which was previously a unique feature of S. luei. However, it differs from the latter by having a broad ovate leaf blade, longer peduncle, and sexual dimorphic flowers. Further phylogenetic analyses revealed that the new species were placed in a unique position in a subclade of Old World Smilax based on ptDNA and nrITS sequences. Combining detailed morphological comparisons and molecular evidence, we validated that S. weniae is an undescribed new species. Moreover, the plastome characteristics of S. weniae are reported.