Yuki Yamamoto

Dr. Yuki Yamamoto

orcid

Research Focus & Metrics

Academic Career Length

24Years (2003-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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25 March 2020 in Cancer Science
Verified
Journal Article
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YKYumiko Koi
Yumiko Koi
Yasuhiro TsutaniYasuhiro Tsutani
Yasuhiro Tsutani
YNYukie Nishiyama
Yukie Nishiyama
DUDaisuke Ueda
Daisuke Ueda
YIYuta Ibuki
Yuta Ibuki
Hidetoshi TaharaHidetoshi Tahara
Hidetoshi Tahara
Emerging evidence indicates that small RNAs, including microRNAs (miRNAs) and their isoforms (isomiRs), and transfer RNA fragments (tRFs), are differently expressed in breast cancer (BC) and can be detected in blood circulation. Circulating small RNAs and small RNAs in extracellular vesicles (EVs) have emerged as ideal markers in small RNA‐based applications for cancer detection. In this study, we first undertook small RNA sequencing to assess the expression of circulating small RNAs in the serum of BC patients and cancer‐free individuals (controls). Expression of 3 small RNAs, namely isomiR of miR‐21‐5p (3′ addition C), miR‐23a‐3p and tRF‐Lys (TTT), was significantly higher in BC samples and was validated by small RNA sequencing in an independent cohort. Our constructed model using 3 small RNAs showed high diagnostic accuracy with an area under the receiver operating characteristic curve of 0.92 and discriminated early‐stage BCs at stage 0 from control. To test the possibility that these small RNAs are released from cancer cells, we next examined EVs from the serum of BC patients and controls. Two of the 3 candidate small RNAs were identified, and shown to be abundant in EVs of BC patients. Interestingly, these 2 small RNAs are also more abundantly detected in culture media of breast cancer cell lines (MCF‐7 and MDA‐MB‐231). The same tendency in selective elevation seen in total serum, serum EV, and EV derived from cell culture media could indicate the efficiency of this model using total serum of patients. These findings indicate that small RNAs serve as significant biomarkers for BC detection.

19 February 2020 in Cancer Science
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Journal Article
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YSYoshitomo Shiroma
Yoshitomo Shiroma
RTRyou-u Takahashi
Ryou-u Takahashi
YYYuki Yamamoto
Yuki Yamamoto
Hidetoshi TaharaHidetoshi Tahara
Hidetoshi Tahara
Dysregulation or mutation of DNA binding proteins such as transcription factors (TFs) is associated with the onset and progression of various types of disease, including cancer. Alteration of TF activity occurs in numerous cancer tissues due to gene amplification, deletion, and point mutations, and epigenetic modification. Although cancer‐associated TFs are promising targets for cancer therapy, development of drugs targeting these TFs has historically been difficult due to the lack of high‐throughput screening methods. Recent advances in technology for identification and selective inhibition of DNA binding proteins enable cancer researchers to develop novel therapeutics targeting cancer‐associated TFs. In the present review, we summarize known cancer‐associated TFs according to cancer type and introduce recently developed high‐throughput approaches to identify selective inhibitors of cancer‐associated TFs.

20 October 2003 in Applied Physics Letters
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Journal Article
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NFNaoki Fukata
Naoki Fukata
YYYuki Yamamoto
Yuki Yamamoto
KMK. Murakami
K. Murakami
MHM. Hase
M. Hase
MKM. Kitajima
M. Kitajima
We measured real-time spectra of light transmitted through SiO2 specimens during irradiation of amplified ultrashort laser with a fluence of 540 mJ/cm2. The real-time spectra exhibit a peak at around 400 nm, which significantly depends on the irradiation time. The observation and identification of defects were performed by measurements of electron spin resonance (ESR). Both dependences of the peak at around 400 nm on irradiation time and laser power are in good agreement with those of the ESR signal intensity of positively charged oxygen vacancies (E′ center). This strong correlation shows that self-trapped excitons are created followed by the formation of the E′ center and finally that of ESR inactive centers, namely, oxygen-deficiency centers.

6 April 2020 in Cancer Science
Verified
Journal Article
Open access
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YKYumiko Koi
Yumiko Koi
Yasuhiro TsutaniYasuhiro Tsutani
Yasuhiro Tsutani
YNYukie Nishiyama
Yukie Nishiyama
MKMiyuki Kanda
Miyuki Kanda
YSYoshitomo Shiroma
Yoshitomo Shiroma
Hidetoshi TaharaHidetoshi Tahara
Hidetoshi Tahara
The telomere G‐tail (G‐tail) plays an essential role in maintaining chromosome stability. In this study, we assessed the leukocyte G‐tail length of breast cancer (BC) patients and cancer‐free individuals and evaluated the association between the G‐tail length and the presence of BC. A significant shortening of the median G‐tail length was observed in BC patients compared with cancer‐free individuals and was found in the early phase of BC. Our study indicated that the leukocyte G‐tail length might be a potential biomarker for BC detection.

12 December 2022 in Journal of Clinical Medicine
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Journal Article
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JHJiayan Han
Jiayan Han
SHSoichiro Hayashi
Soichiro Hayashi
RTRyou-u Takahashi
Ryou-u Takahashi
RHRyosuke Hirohata
Ryosuke Hirohata
TKTomoaki Kurokawa
Tomoaki Kurokawa
Hidetoshi TaharaHidetoshi Tahara
Hidetoshi Tahara
Despite significant advances in therapeutics for esophageal cancer (ESC) in the past decade, it remains the sixth most fatal malignancy, with a poor 5-year survival rate (approximately 10%). There is an urgent need to improve the timely diagnosis to aid the prediction of the therapeutic response and prognosis of patients with ESC. The telomeric G-tail plays an important role in the chromosome protection. However, aging and age-related diseases lead to its shortening. Therefore, the G-tail length has been proposed as a novel potential biomarker. In the present study, to examine the possibility of G-tail shortening in patients with ESC, we measured the leukocyte telomere length (LTL) and the G-tail length using a hybridization protection assay in 147 patients with ESC and 170 age-matched healthy controls. We found that the G-tail length in patients with ESC was shorter than that in the healthy controls (p = 0.02), while the LTL shortening was not correlated with the ESC incidence and recurrence. Our results suggest that the G-tail length reflects the physiological status of patients with ESC and is a promising biomarker for the diagnosis and prognosis of ESC.

25 April 2024 in Genes
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Journal Article
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YYYuki Yamamoto
Yuki Yamamoto
RTRyou-u Takahashi
Ryou-u Takahashi
MKMasaki Kinehara
Masaki Kinehara
KYKimiyoshi Yano
Kimiyoshi Yano
TKTatsuya Kuramoto
Tatsuya Kuramoto
Hidetoshi TaharaHidetoshi Tahara
Hidetoshi Tahara
Cellular senescence is an irreversible growth arrest that acts as a barrier to cancer initiation and progression. Histone alteration is one of the major events during replicative senescence. However, little is known about the function of H3.3 in cellular senescence. Here we found that the downregulation of H3.3 induced growth suppression with senescence-like phenotypes such as senescence-associated heterochromatin foci (SAHF) and β-galactosidase (SA-β-gal) activity. Furthermore, H3.3 depletion induced senescence-like phenotypes with the p53/p21-depedent pathway. In addition, we identified miR-22-3p, tumor suppressive miRNA, as an upstream regulator of the H3F3B (H3 histone, family 3B) gene which is the histone variant H3.3 and replaces conventional H3 in active genes. Therefore, our results reveal for the first time the molecular mechanisms for cellular senescence which are regulated by H3.3 abundance. Taken together, our studies suggest that H3.3 exerts functional roles in regulating cellular senescence and is a promising target for cancer therapy.