The bottle gourd [Lagenaria siceraria (Molina) Standl.] is often utilized as a rootstock for watermelon grafting. This practice effectively mitigates the challenges associated with continuous cropping obstacles in watermelon cultivation. The lower ground temperature has a direct impact on the rootstocks’ root development and nutrient absorption, ultimately leading to slower growth and even the onset of yellowing. However, the mechanisms underlying the bottle gourd’s regulation of root growth in response to low root zone temperature (LRT) remain elusive. Understanding the dynamic response of bottle gourd roots to LRT stress is crucial for advancing research regarding its tolerance to low temperatures. In this study, we compared the physiological traits of bottle gourd roots under control and LRT treatments; root sample transcriptomic profiles were monitored after 0 h, 48 h and 72 h of LRT treatment. LRT stress increased the malondialdehyde (MDA) content, relative electrolyte permeability and reactive oxygen species (ROS) levels, especially H₂O₂ and O²⁻. Concurrently, LRT treatment enhanced the activities of antioxidant enzymes like superoxide dismutase (SOD) and peroxidase (POD). RNA-Seq analysis revealed the presence of 2507 and 1326 differentially expressed genes (DEGs) after 48 h and 72 h of LRT treatment, respectively. Notably, 174 and 271 transcription factors (TFs) were identified as DEGs compared to the 0 h control. We utilized quantitative real-time polymerase chain reaction (qRT-PCR) to confirm the expression patterns of DEGs belonging to the WRKY, NAC, bHLH, AP2/ERF and MYB families. Collectively, our study provides a robust foundation for the functional characterization of LRT-responsive TFs in bottle gourd roots. Furthermore, these insights may contribute to the enhancement in cold tolerance in bottle gourd-type rootstocks, thereby advancing molecular breeding efforts.

Auxin response factors (ARFs) are pivotal transcription factors involved in many aspects of auxin-dependent developmental processes. While functions of ARFs have been extensively studied in Arabidopsis, their distinct role in cucumber remains unclear. In this study, a cucumber auxin response factor homolog, CsARF10a, was cloned and overexpressed in tomato plants. RT-qPCR analysis indicated that the expression abundance of CsARF10a was significantly decreased in cucumber leaves and female flowers, and the expression level of CsARF10a was relatively low in pollinated fruits and hormone-treated fruits compared with that in unpollinated fruits. Moreover, the overexpression of CsARF10a in tomato resulted in multiple phenotypic changes, including a wider leaf blade, delayed fruit ripening, and parthenocarpic fruit set in CsARF10a-OE lines. Taken together, our research shed light on the regulatory importance of CsARF10a in regulating various phenotype alterations and laid a solid foundation for further functional studies.