Mechanisms of protecting soil carbon (C) are still poorly understood despite growing needs to predict and manage the changes in soil C or organic matter (OM) under anticipated climate change. A fundamental question is how the submicron-scale interaction between OM and soil minerals, especially poorly-crystalline phases, affects soil physical aggregation and C stabilization. Nano-sized composites rich in OM and poorly-crystalline mineral phases were presumed to account for high aggregate stability in the Andisol we previously studied. Here we searched for these nanocomposites within a sonication-resistant aggregate using scanning transmission X-ray microscopy (STXM) and near-edge X-ray absorption fine structure (NEXAFS) as well as electron microscopy (SEM, TEM). Specifically, we hypothesized that nanometer-scale spatial distribution of OM is controlled by poorly-crystalline minerals as both co-exist as physically-stable nanocomposites. After maximum dispersion of the cultivated Andisol A-horizon sample in water, one aggregate (a few µm in diameter) was isolated from 0.2–2 µm size fraction which accounted for 44–47% of total C and N and 50% of poorly-crystalline minerals in bulk soil. This fraction as well as 2 µm size fractions, implying high abundance of the nanocomposites in the smaller fractions. The isolated aggregate showed a mosaic of two distinctive regions. Smooth surface regions showed low adsorption intensity of carbon K-edge photon energy (284–290 eV) with well-crystalline mineralogy, whereas rough surface regions had features indicative of the nanocomposites: aggregated nanostructure, high C intensity, X-ray amorphous mineral phase, and the dominance of Si, O, Al, and Fe based on SEM/EDX and TEM/EDX. Carbon functional group chemistry assessed by NEXAFS showed the dominance of amide and carboxyl C over aromatic and aliphatic C with some variation among the four rough surface regions. Together with C and N isotopic patterns among the size fractions (relatively low C:N ratio, high ¹⁵N natural abundance, and more positive Δ¹⁴C of the <2 μm fractions), our results provided the direct evidence of preferential binding of microbially-altered, potentially-labile C with poorly-crystalline mineral phases at submicron scale. The role of the nanocomposite inferred from this study may help to bridge the knowledge gap between physical aggregation process and biogeochemical reactions taking place within the soil physical structure.

Interaction of organic matter (OM) with soil mineral components plays a critical role in biophysical organization (aggregate structure) as well as in biogeochemical cycling of major elements. Of the mineral components, poorly-crystalline phases rich in iron (Fe) and aluminum (Al) are highly reactive and thus contribute to both OM stabilization and aggregation. However, the functional relationship among the reactive metal phases, C stability, and aggregation remains elusive. We hypothesized that relatively young C acts as a binding agent to form the aggregates of weak physical stability, whereas the reactive metal phases and older C bound to them contribute to stronger aggregation. Using four surface horizons of Andisols having a gradient of soil C concentration due to decadal OM management, we conducted sequential density fractionation to isolate six fractions (from 2.5 g cm⁻³) with mechanical shaking, followed by selective dissolution and radiocarbon analysis. After 28 years of no-till with litter compost addition, not only C and N but inorganic materials including the reactive metal phases (pyrophosphate-, oxalate-, and dithionite-extractable metals) showed clear shifts in their concentrations towards lower-density fractions (especially <2.0 g cm⁻³) on a ground-area basis. This result was explained by the binding of compost-derived OM with soil particles. Major portions of the reactive metal phases in bulk samples were distributed in mid-density fractions (2.0–2.5 g cm⁻³) largely as sonication-resistant aggregates. Theoretical density calculations, together with depletion in radiocarbon (Δ¹⁴C: −82 to −170‰) and lower C:N ratio, implied that the sorptive capacity of the reactive metal phases in these fractions were roughly saturated with pre-existing OM. However, the influx of the compost-derived, modern C into the mid-density fractions detected by the paired-plot comparison suggests decadal C sink in association with the reactive metal phase. Our results supported the concept of aggregate hierarchy and further provided the following new insights. At the high hierarchy level where shaking-resistant aggregates form, soil organo-mineral particles appeared to be under a dynamic equilibrium and the changes in OM input regime controlled (dis)aggregation behavior due to the binding effect of relatively young C. At a lower hierarchy level, the reactive metal phases were bound to N-rich, ¹⁴C-depleted OM and together functioned as persistent binding agent. Our study suggests that the recognition of binding agents and aggregate hierarchy level would help to untangle the complex organo-mineral interactions and to better understand soil C stability.

The bare lands formed after volcanic eruptions provide an excellent opportunity to study the interactions between vegetation succession and soil formation. To explore the changes in soil physicochemical properties in the vegetation succession processes and the relationship between them, soil physicochemical properties of different volcanic ash accumulation on Miyake-jima Island were studied at different vegetation succession stages. The results showed that soil bulk density gradually decreased and that soil porosity, soil water content (SWC), pH, cation exchange capacity (CEC), soil total organic carbon (TOC), and total nitrogen (TN) increased significantly with vegetation succession. The physicochemical properties changes in the soil surface horizon were most obvious, and the deep soil accumulated a large amount of relatively stable soil carbon and nitrogen. The forest land formed a thicker organic matter horizon, accumulating more carbon and nitrogen than grassland, and the soil quality index (SQI) was higher than that of grassland and shrubland. In conclusion, our research indicates the significant change in soil physicochemical properties and the improvement in soil quality in the vegetation succession processes, emphasizing a significant relationship between vegetation succession and soil development in bare land.

The disposal of aged thatch from traditional roofs represents a significant waste stream and threatens cultural heritage preservation in Japan. This study evaluated the potential of repurposing these culturally significant residues within a circular economy framework by comparing their direct application as growth media with that of their corresponding biochar derivatives. Using controlled lettuce (Lactuca sativaL.) bioassays, we assessed germination and early growth at multiple treatment rates. The results revealed a wide contrast: untreated thatch residues exhibited significant, dose-dependent inhibitory effects, reducing germination by up to 32% at the highest rate (2 g). In contrast, the biochar growth medium consistently enhanced plant performance; for instance, Miscanthus biochar achieved 100% germination and the fastest mean germination time. Physicochemical analysis showed that pyrolysis converted the acidic, high-volatility thatch into alkaline, stable biochar with a 50–70 times greater surface area, effectively mitigating rapid nitrogen release and the likely growth-inhibitory effects associated with the accumulation of mineral nitrogen. We conclude that pyrolysis plays a vital role in transforming aged thatch from a problematic cultural residue into a valuable soil amendment. This process offers a practical pathway for supporting sustainable agriculture, promoting circular economies, and preserving traditional landscapes.