Harry Morris

Mr. Harry Morris

orcid

Research Focus & Metrics

Academic Career Length

4Years (2023-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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9 August 2023 in Methods in Ecology and Evolution
Verified
Journal Article
Open access
LBLuke Brown
Luke Brown
HMHarry Morris
Harry Morris
SLSylvain Leblanc
Sylvain Leblanc
GBGabriele Bai
Gabriele Bai
Christian LanconelliChristian Lanconelli
Christian Lanconelli
Jadunandan DashJadunandan Dash
Jadunandan Dash
Digital hemispherical photography (DHP) is widely used to derive forest biophysical variables including leaf, plant, and green area index (LAI, PAI and GAI), the fraction of intercepted photosynthetically active radiation (FIPAR), and the fraction of vegetation cover (FCOVER). However, the majority of software packages for processing DHP data are based on a graphical user interface, making programmatic analysis difficult. Meanwhile, few natively support analysis of RAW image formats, while none incorporate the propagation or provision of uncertainties. To address these limitations, we present HemiPy, an open‐source Python module for deriving forest biophysical variables and uncertainties from DHP images in an automated manner. We assess HemiPy using simulated hemispherical images, in addition to multiannual time‐series and litterfall data from several forested National Ecological Observatory Network (NEON) sites, as well as comparison against the CAN‐EYE software package. Multiannual time‐series of PAI, FIPAR and FCOVER demonstrate HemiPy's outputs realistically represent expected temporal patterns. Comparison against litterfall data reveals reasonable accuracies are achievable, with RMSE values close to the error of ~1 unit typically attributed to optical LAI measurement approaches. HemiPy's PAI, FIPAR and FCOVER outputs demonstrate good agreement with CAN‐EYE. Consistent with previous studies, when compared to simulated hemispherical images, better agreement is observed for PAI derived using gap fraction near the hinge angle of 57.5° only, as opposed to values derived using gap fraction over a wider range of zenith angles. HemiPy should prove a useful tool for processing DHP images, and its open‐source nature means that it can be adopted, extended and further refined by the user community.

7 June 2024 in Remote Sensing
Verified
Journal Article
Open access
PDF file
LBLuke Brown
Luke Brown
HMHarry Morris
Harry Morris
AMAndrew MacLachlan
Andrew MacLachlan
FDFracesco D'Adamo
Fracesco D'Adamo
JAJennifer Adams
Jennifer Adams
Jadunandan DashJadunandan Dash
Jadunandan Dash
As an unprecedented stream of decametric hyperspectral observations becomes available from recent and upcoming spaceborne missions, effective algorithms are required to retrieve vegetation biophysical and biochemical variables such as leaf area index (LAI) and canopy chlorophyll content (CCC). In the context of missions such as the Environmental Mapping and Analysis Program (EnMAP), Precursore Iperspettrale della Missione Applicativa (PRISMA), Copernicus Hyperspectral Imaging Mission for the Environment (CHIME), and Surface Biology Geology (SBG), several retrieval algorithms have been developed based upon the turbid medium Scattering by Arbitrarily Inclined Leaves (SAIL) radiative transfer model. Whilst well suited to cereal crops, SAIL is known to perform comparatively poorly over more heterogeneous canopies (including forests and row-structured crops). In this paper, we investigate the application of hybrid radiative transfer models, including a modified version of SAIL (rowSAIL) and the Invertible Forest Reflectance Model (INFORM), to such canopies. Unlike SAIL, which assumes a horizontally homogeneous canopy, such models partition the canopy into geometric objects, which are themselves treated as turbid media. By enabling crown transmittance, foliage clumping, and shadowing to be represented, they provide a more realistic representation of heterogeneous vegetation. Using airborne hyperspectral data to simulate EnMAP observations over vineyard and deciduous broadleaf forest sites, we demonstrate that SAIL-based algorithms provide moderate retrieval accuracy for LAI (RMSD = 0.92–2.15, NRMSD = 40–67%, bias = −0.64–0.96) and CCC (RMSD = 0.27–1.27 g m−2, NRMSD = 64–84%, bias = −0.17–0.89 g m−2). The use of hybrid radiative transfer models (rowSAIL and INFORM) reduces bias in LAI (RMSD = 0.88–1.64, NRMSD = 27–64%, bias = −0.78–−0.13) and CCC (RMSD = 0.30–0.87 g m−2, NRMSD = 52–73%, bias = 0.03–0.42 g m−2) retrievals. Based on our results, at the canopy level, we recommend that hybrid radiative transfer models such as rowSAIL and INFORM are further adopted for hyperspectral biophysical and biochemical variable retrieval over heterogeneous vegetation.

26 September 2023 in IEEE Geoscience and Remote Sensing Letters
Verified
Journal Article
Closed access
LBLuke Brown
Luke Brown
HMHarry Morris
Harry Morris
CMCourtney Meier
Courtney Meier
AKAlexander Knohl
Alexander Knohl
Christian LanconelliChristian Lanconelli
Christian Lanconelli
MDMark Danson
Mark Danson
The Global Ecosystem Dynamics Investigation (GEDI) aims to provide improved characterization of forest structure, and plant area index (PAI) is one of many variables provided in the official GEDI Level 2B (L2B) product suite. However, since release, few quantitative validation studies have been conducted. To reach Stage 1 of the validation hierarchy proposed by the Land Product Validation (LPV) sub-group of the Committee on Earth Observation Satellites (CEOS) Working Group on Calibration and Validation (WGCV), we provide an initial assessment of PAI estimates from GEDI’s L2B product. This is achieved using 18 in situ reference measurements available through the Copernicus Ground Based Observations for Validation (GBOV) service. We show that GEDI L2B PAI retrievals provide a nearly unbiased estimate of effective (PAI e ) (RMSD = 0.95, bias = 0.02, slope = 1.07), but systematically underestimate PAI (RMSD = 1.42, bias = -0.91, slope = 0.77). This is attributed to an assumed random distribution of plant material in the algorithm. To reach Stage 2 of the CEOS WGCV LPV hierarchy, continued work is needed to validate the product against additional in situ reference measurements covering further locations and time periods.

23 July 2024 in Remote Sensing
Verified
Journal Article
Open access
PDF file
Fernando Camacho De CocaFernando Camacho De Coca
Fernando Camacho De Coca
Enrique Martínez-SánchezEnrique Martínez-Sánchez
Enrique Martínez-Sánchez
LBLuke Brown
Luke Brown
HMHarry Morris
Harry Morris
RMRosalinda Morrone
Rosalinda Morrone
VBValentina Boccia
Valentina Boccia
This article presents validation and conformity testing of the Sentinel-3 Ocean Land Colour Instrument (OLCI) green instantaneous fraction of absorbed photosynthetically active radiation (FAPAR) and OLCI terrestrial chlorophyll index (OTCI) canopy chlorophyll content (CCC) products with fiducial reference measurements (FRM) collected in 2018 and 2021 over two sites (Las Tiesas—Barrax, Spain, and Wytham Woods, UK) in the context of the European Space Agency (ESA) Fiducial Reference Measurement for Vegetation (FRM4Veg) initiative. Following metrological principles, an end-to-end uncertainty evaluation framework developed in the project is used to account for the uncertainty of reference data based on a two-stage validation approach. The process involves quantifying uncertainties at the elementary sampling unit (ESU) level and incorporating these uncertainties in the upscaling procedures using orthogonal distance regression (ODR) between FRM and vegetation indices derived from Sentinel-2 data. Uncertainties in the Sentinel-2 data are also accounted for. FRM-based high spatial resolution reference maps and their uncertainties were aggregated to OLCI’s native spatial resolution using its apparent point spread function (PSF). The Sentinel-3 mission requirements, which give an uncertainty of 5% (goal) and 10% (threshold), were considered for conformity testing. GIFAPAR validation results revealed correlations > 0.95, RMSD ~0.1, and a slight negative bias (~−0.06) for both sites. This bias could be partly explained by the differences in the FAPAR definitions between the satellite product and the FRM-based reference. For the OTCI-based CCC, leave-one-out cross-validation demonstrated correlations > 0.8 and RMSDcv ~0.28 g·m−2. Despite the encouraging validation results, conclusive conformity with the strict mission requirements was low, with most cases providing inconclusive results (driven by large uncertainties in the satellite products as well as by the uncertainties in the upscaling approach). It is recommended that mission requirements for bio-geophysical products are reviewed, at least at the threshold level. It is also suggested that the large uncertainties associated with the two-stage validation approach may be avoided by directly comparing with spatially representative FRM.

29 April 2024 in Frontiers in Remote Sensing
Verified
Journal Article
Open access
HMHarry Morris
Harry Morris
MSMorven Sinclair
Morven Sinclair
PVPieter De Vis
Pieter De Vis
ABAgnieszka Bialek
Agnieszka Bialek
This paper demonstrates the use of a novel, autonomous hyperspectral surface reflectance data collected at Wytham Woods, United Kingdom (WWUK) as part of the LANDHYPERNET network for the validation of multispectral data from Sentinel-2, Landsat 8 and Landsat 9. The deployment of the HYPSTAR instrument at the site and the corresponding quality control of the data products is described. In addition, a methodology based upon metrological principles is outlined showing the propagation of uncertainties from the LANDHYPERNET and satellite data products to enable conformity testing of the satellite products using the satellite mission requirements. A total of 9 matchups are found for satellite validation at the site, where there is a cloud-free satellite scene and a corresponding LANDHYPERNET sequence, which has passed all quality checks, within two hours of the overpass. An analysis of the impact of the spatial variability of the site is presented and can account for up to 40% of the uncertainty associated with the in-situ surface reflectance data. There is no systematic bias in the Bottom-Of-Atmosphere reflectance data obtained from the LANDHYPERNET data in comparison to the satellite data. In the best case, differences of less than 2% are found for certain spectral bands. However, in the worst cases, relatively large differences are found which exceed 100%, this is affected by the relatively low reflectance values found in the visible bands. These differences could be caused by the spatial and temporal mismatch between the in-situ and satellite measurement, or due to shadowing caused by the flux tower. Further data quality control and assurance is needed to best choose data sets suitable for satellite validation. Incorporating a Bidirectional Reflectance Distribution Function model into the processing chain for the forest canopy is recommended. Overall, although there are areas to further characterise, the site provides a useful benchmark for which to develop techniques for validation of satellite surface reflectance products over a challenging environment.