With the increase in port throughput and the development of the trend of large-scale ships, selecting applicable anchor positions for ships and ensuring the rational and comprehensive utilization of anchorage areas have become a key issue in utilizing the rate of anchorage resources, ensuring the safety of ships anchoring operations and promoting the development of the shipping industry. Existing anchor position selection and detection algorithm studies are limited to a two-dimensional plane for ship anchor position selection, with few studies considering intelligent detection algorithms for safe ship anchoring water depths based on three-dimensional space, considering conditions such as wind and waves. By considering water depth conditions and the objectives of anchorage safety issues, this study proposes an intelligent detection method for ship anchor detection to find the ship’s ideal anchor location in the anchorages by applying the Monte Carlo algorithm. In the processing step, in combination with the Monte Carlo random plane anchor position detection algorithm and Monte Carlo random sampling water depth detection method, the anchor position circle radius model, safe spacing model, anchoring area detection model and safe water depth model are used for examining the anchorage area for awaiting the ship in three-dimensions. To verify the accuracy of the proposed model, based on the scale of common ship types and considering the most conservative parameters, a series of simulation experiments are conducted to check whether the water depth meets the requirements and fully ensure the safety of the experimental results. The research results indicate that the detection almost cover the whole anchorage area and obtain safe water depth restrictions. This method helps to improve the efficiency of ship anchoring and makes actual anchoring operations safer. Under the premise of ensuring sufficient safe spacing between ships, the anchorage ground can accommodate more ships and simulate multi-type ship anchor position detection operations concerning various ship-type parameters to further ensure the safety of ship anchoring.