Tsutomu Kakuda

Prof. Tsutomu Kakuda


Research Focus & Metrics

Academic Career Length

31Years (1996-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 December 2000 in Infection and Immunity
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Journal Article
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STShinji Takai
Shinji Takai
SHStephen A. Hines
Stephen A. Hines
TSTsutomu Sekizaki
Tsutomu Sekizaki
VNVivian M. Nicholson
Vivian M. Nicholson
DADebra A. Alperin
Debra A. Alperin
JPJohn F. Prescott
John F. Prescott
The virulence plasmids of the equine virulent strains Rhodococcus equi ATCC 33701 and 103 were sequenced, and their genetic structure was analyzed. p33701 was 80,610 bp in length, and p103 was 1 bp shorter; their sequences were virtually identical. The plasmids contained 64 open reading frames (ORFs), 22 of which were homologous with genes of known function and 3 of which were homologous with putative genes of unknown function in other species. Putative functions were assigned to five ORFs based on protein family characteristics. The most striking feature of the virulence plasmids was the presence of a 27,536-bp pathogenicity island containing seven virulence-associated protein ( vap ) genes, including vapA . These vap genes have extensive homology to vapA , which encodes a thermoregulated and surface-expressed protein. The pathogenicity island contained a LysR family transcriptional regulator and a two-component response regulator upstream of six of the vap genes. The vap genes were present as a cluster of three ( vapA , vapC , and vapD ), as a pair ( vapE and vapF ), or individually ( vapG ; vapH ). A region of extensive direct repeats of unknown function, possibly associated with thermoregulation, was present immediately upstream of the clustered and the paired genes but not the individual vap genes. There was extensive homology among the C-terminal halves of all vap genes but not generally among the N-terminal halves. The remainder of the plasmid consisted of a large region which appears to be associated with conjugation functions and a large region which appears to be associated with replication and partitioning functions.

1 March 2009 in Journal of Bacteriology
Verified
Journal Article
Closed access
LDLindsay M. Davis
Lindsay M. Davis
TKTsutomu Kakuda
Tsutomu Kakuda
VDVictor Dirita
Victor Dirita
Campylobacter jejuni infection is a leading cause of bacterial gastroenteritis in the United States and is acquired primarily through the ingestion of contaminated poultry products. Here, we describe the C. jejuni orthologue of ZnuA in other gram-negative bacteria. ZnuA (Cj0143c) is the periplasmic component of a putative zinc ABC transport system and is encoded on a zinc-dependent operon with Cj0142c and Cj0141c, which encode the other two likely components of the transport system of C. jejuni . Transcription of these genes is zinc dependent. A mutant lacking Cj0143c is growth deficient in zinc-limiting media, as well as in the chick gastrointestinal tract. The protein is glycosylated at asparagine 28, but this modification is dispensable for zinc-limited growth and chick colonization. Affinity-purified FLAG-tagged Cj0143c binds zinc in vitro. Based on our findings and on its homology to E. coli ZnuA, we conclude that Cj0143c encodes the C. jejuni orthologue of ZnuA.

1 September 1999 in Parasitology Research
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Journal Article
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JCJoon-Seok Chae
Joon-Seok Chae
BABasil A. Allsopp
Basil A. Allsopp
SWSuryakant D. Waghela
Suryakant D. Waghela
JPJin-Ho Park
Jin-Ho Park
TKTsutomu Kakuda
Tsutomu Kakuda
PHPatricia J. Holman
Patricia J. Holman

1 July 1998 in Comparative Immunology, Microbiology and Infectious Diseases
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Journal Article
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MOMisao Onuma
Misao Onuma
TKTsutomu Kakuda
Tsutomu Kakuda
CSChihiro Sugimoto
Chihiro Sugimoto

29 September 2014 in PLOS ONE
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Journal Article
Open access
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KNKeita Nishiyama
Keita Nishiyama
YSYasuyuki Seto
Yasuyuki Seto
KYKazuki Yoshioka
Kazuki Yoshioka
TKTsutomu Kakuda
Tsutomu Kakuda
STShinji Takai
Shinji Takai
TMTakao Mukai
Takao Mukai
Campylobacter is a normal inhabitant of the chicken gut. Pathogenic infection with this organism in humans is accompanied by severe inflammation of the intestinal mucosal surface. The aim of this study was to evaluate the ability of Lactobacillus gasseri SBT2055 (LG2055) to inhibit the adhesion and invasion of Campylobacter jejuni in vitro and to suppress C. jejuni colonization of chicks in vivo. Pretreatment with LG2055 significantly reduced adhesion to and invasion of a human epithelial cell line, Intestine 407, by C. jejuni 81–176. Methanol (MeOH)-fixed LG2055 also reduced infection by C. jejuni 81–176. However, proteinase K (ProK)-treated LG2055 eliminated the inhibitory effects. Moreover, LG2055 co-aggregated with C. jejuni 81–176. ProK treatment prevented this co-aggregation, indicating that the co-aggregation phenotype mediated by the proteinaceous cell-surface components of LG2055 is important for reducing C. jejuni 81–176 adhesion and invasion. In an in vivo assay, oral doses of LG2055 were administered to chicks daily for 14 days after oral inoculation with C. jejuni 81–176. At 14 days post-inoculation, chicks treated with LG2055 had significantly reduced cecum colonization by C. jejuni. Reduction in the number of C. jejuni 81–176 cells adhering to and internalized by human epithelial cells demonstrated that LG2055 is an organism that effectively and competitively excludes C. jejuni 81–176. In addition, the results of the chick colonization assay suggest that treatment with LG2055 could be useful in suppressing C. jejuni colonization of the chicks at early growth stages.

1 August 1998 in International Journal for Parasitology
Verified
Journal Article
Closed access
TKTsutomu Kakuda
Tsutomu Kakuda
MSMasako Shiki
Masako Shiki
SKShuichi Kubota
Shuichi Kubota
CSChihiro Sugimoto
Chihiro Sugimoto
WBWendy C Brown
Wendy C Brown
MOMisao Onuma
Misao Onuma