It is necessary to maintain maneuverability for ship navigation in shallow water, such as channels, ports and other confined waters. In this study, a turning circle maneuver with 35° rudder deflection and a 20/5 zigzag maneuver for KVLCC2 in shallow waters are tested numerically to directly predict the maneuverability of the ship in shallow water. A viscous in-house CFD solver is applied with the dynamic overset grid approach. The impacts of the water depth on the ship’s maneuverability in terms of turning and zigzag competence are evaluated, and the underlying mechanism is analyzed. The numerical method is validated by comparing it with experimental data on the turning indices, which shows good agreement. It is demonstrated that the turning capability become worse with a smaller depth–draft ratio, thus resulting in a lower yaw rate and a greater steady turning diameter. However, the drift angle and lateral speed are reduced with a smaller depth–draft ratio for zigzag maneuvers, but the overshoot angle and turn lag vary with the water depth non-monotonically.