Özgür Çakır

Dr. Özgür Çakır


Research Focus & Metrics

Academic Career Length

20Years (2007-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 March 2019 in Food Science and Technology
Verified
Journal Article
Open access
PDF file
ÖÇÖzgür Çakır
Özgür Çakır
CUCüneyt Uçarlı
Cüneyt Uçarlı
ÇTÇağatay Tarhan
Çağatay Tarhan
MPMurat Pekmez
Murat Pekmez
NTNeslihan Turgut-Kara
Neslihan Turgut-Kara
Legumes are indispensable for human diet in respect to their valuable and nutritive bioactive molecules. Legumes and derivative foodstuffs are rich in fiber, proteins, vitamins and some valuable phytochemicals, which exhibit important biological activities. Due to their remarkable molecular content, they are receiving great attention by researchers. Recent developments in genomics and bioinformatics led to cumulative data about legume genomes. These data could provide important information to accelerate breeding and to develop new traits for biofortification. The main focus of this review is to present their distinctive genomic properties by summarizing significant studies conducted with relatively newly developed techniques revealing the beneficial effects of bioactive molecules from legumes on human health.

21 May 2015 in Plant Biotechnology Journal
Verified
Journal Article
Closed access
PDF file
ÖÇÖzgür Çakır
Özgür Çakır
BCBilgin Candar‐Cakir
Bilgin Candar‐Cakir
Baohong ZhangBaohong Zhang
Baohong Zhang

2 October 2015 in PLOS ONE
Verified
Journal Article
Open access
PDF file
ÖÇÖzgür Çakır
Özgür Çakır
NTNeslihan Turgut-Kara
Neslihan Turgut-Kara
ŞAŞule Arı
Şule Arı
BZBaohong Zhang
Baohong Zhang
Astragalus species are medicinal plants that are used in the world for years. Some Astragalus species are known for selenium accumulation and tolerance and one of them is Astragalus chrysochlorus, a secondary selenium accumulator. In this study, we employed Illumina deep sequencing technology for the first time to de novo assemble A. chrysochlorus transcriptome and identify the differentially expressed genes after selenate treatment. Totally, 59,656 unigenes were annotated with different databases and 53,960 unigenes were detected in NR database. Transcriptome in A. chrysochlorus is closer to Glycine max than other plant species with 43,1 percentage of similarity. Annotated unigenes were also used for gene ontology enrichment and pathway enrichment analysis. The most significant genes and pathways were ABC transporters, plant pathogen interaction, biosynthesis of secondary metabolites and carbohydrate metabolism. Our results will help to enlighten the selenium accumulation and tolerance mechanisms, respectively in plants.

1 June 2014 in Food Science and Technology
Verified
Journal Article
Open access
PDF file
ÖÇÖzgür Çakır
Özgür Çakır
MPMurat Pekmez
Murat Pekmez
EÇElif Çepni
Elif Çepni
BCBilgin Candar
Bilgin Candar
KFKerem Fidan
Kerem Fidan
Physalis species are used in folk medicine for phytotherapeutic properties. The extracts of medicinal plants are known to possess cytotoxic and chemopreventative compounds. In this study we investigated antibacterial, antioxidant, DNA damage preventative properties of Physalis peruviana (golden berry) on leaf and shoot ethanol extracts and their effects on cytotoxicity of HeLa cells and expression of apoptotic pathway genes. Among the tested bacteria for antibacterial activity, maximum inhibition zone was determined in Lactococcus lactis. The phenolic content was found higher in leaf extracts than shoot extracts. The antioxidant activity showed the highest TEAC values of the leaf (2 mg/mL) and the shoot (0.5 mg/mL) extracts as 0.291±0.04 and 0.192±0.015, respectively. In DNA damage prevention assay both leaf and shoot extracts, especially 30 and 20 µg/mL concentrations, exhibited significant protection against DNA damage-induced by hydroxyl radical generated by Fenton reaction. Our results suggest that leaf and shoot extracts possess cytotoxic effect on HeLa cells when applied as 100 µg/mL concentration. Also mRNA expression analysis showed the alteration of antiapoptotic genes, so the results suggest that P. peruviana ethanol extracts induce apoptotic cell death and should be investigated for identification of active compounds and their mechanisms of action

1 January 2014 in Genetics and Molecular Research
Verified
Journal Article
Closed access
SMS. Meriç
S. Meriç
ÖÇÖzgür Çakır
Özgür Çakır
NTN. Turgut-Kara
N. Turgut-Kara
ŞAŞ. Arı
Ş. Arı
Despite the controversy about genetically modified (GM) plants, they are still incrementally cultivated. In recent years, many food and feed products produced by genetic engineering technology have appeared on store shelves. Controlling the production and legal presentation of GM crops are very important for the environment and human health, especially in terms of long-term consumption. In this study, 11 kinds of feed obtained from different regions of Turkey were used for genetic analysis based on foreign gene determination. All samples were screened by conventional polymerase chain reaction (PCR) technique for widely used genetic elements; cauliflower mosaic virus 35S promoter (CaMV35S promoter), and nopaline synthase terminator (T-NOS) sequences for GM plants. After determination of GM plant-containing samples, nested PCR and conventional PCR analysis were performed to find out whether the samples contained Bt176 or GTS-40-3-2 for maize and soy, respectively. As a result of PCR-based GM plant analysis, all samples were found to be transgenic. Both 35S- and NOS-containing feed samples or potentially Bt176-containing samples, in other words, were analyzed with Bt176 insect resistant cryIAb gene-specific primers via nested PCR. Eventually, none of them were found Bt176-positive. On the other hand, when we applied conventional PCR to the same samples with the herbicide resistance CTP4-EPSPS construct-specific primers for transgenic soy variety GTS-40-3-2, we found that all samples were positive for GTS-40-3-2.

16 September 2025 in Plant Science
Verified
Journal Article
Closed access
BABurcu Arıkan
Burcu Arıkan
ÖÇÖzgür Çakır
Özgür Çakır
NKNeslihan Turgut Kara
Neslihan Turgut Kara