Hrvoje Bogunović

Prof. Hrvoje Bogunović

orcid

Research Focus & Metrics

Academic Career Length

23Years (2004-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
1 January 2020 in Medical Image Analysis
Verified
Journal Article
Closed access
JOJosé Ignacio Orlando
José Ignacio Orlando
HFHuazhu Fu
Huazhu Fu
JBJoao Barbosa-Breda
Joao Barbosa-Breda
KKKarel van Keer
Karel van Keer
DBDeepti R. Bathula
Deepti R. Bathula
HBHrvoje Bogunović
Hrvoje Bogunović

1 November 2018 in Progress in Retinal and Eye Research
Verified
Journal Article
Open access
USUrsula Schmidt-Erfurth
Ursula Schmidt-Erfurth
ASAmir Sadeghipour
Amir Sadeghipour
BGBianca S. Gerendas
Bianca S. Gerendas
SWSebastian M. Waldstein
Sebastian M. Waldstein
HBHrvoje Bogunović
Hrvoje Bogunović
Major advances in diagnostic technologies are offering unprecedented insight into the condition of the retina and beyond ocular disease. Digital images providing millions of morphological datasets can fast and non-invasively be analyzed in a comprehensive manner using artificial intelligence (AI). Methods based on machine learning (ML) and particularly deep learning (DL) are able to identify, localize and quantify pathological features in almost every macular and retinal disease. Convolutional neural networks thereby mimic the path of the human brain for object recognition through learning of pathological features from training sets, supervised ML, or even extrapolation from patterns recognized independently, unsupervised ML. The methods of AI-based retinal analyses are diverse and differ widely in their applicability, interpretability and reliability in different datasets and diseases. Fully automated AI-based systems have recently been approved for screening of diabetic retinopathy (DR). The overall potential of ML/DL includes screening, diagnostic grading as well as guidance of therapy with automated detection of disease activity, recurrences, quantification of therapeutic effects and identification of relevant targets for novel therapeutic approaches. Prediction and prognostic conclusions further expand the potential benefit of AI in retina which will enable personalized health care as well as large scale management and will empower the ophthalmologist to provide high quality diagnosis/therapy and successfully deal with the complexity of 21st century ophthalmology.

1 April 2018 in Ophthalmology
Verified
Journal Article
Open access
TSThomas Schlegl
Thomas Schlegl
SWSebastian M. Waldstein
Sebastian M. Waldstein
HBHrvoje Bogunović
Hrvoje Bogunović
FEFranz Endstraßer
Franz Endstraßer
ASAmir Sadeghipour
Amir Sadeghipour
USUrsula Schmidt-Erfurth
Ursula Schmidt-Erfurth
Development and validation of a fully automated method to detect and quantify macular fluid in conventional OCT images. Development of a diagnostic modality. The clinical dataset for fluid detection consisted of 1200 OCT volumes of patients with neovascular age-related macular degeneration (AMD, n = 400), diabetic macular edema (DME, n = 400), or retinal vein occlusion (RVO, n = 400) acquired with Zeiss Cirrus (Carl Zeiss Meditec, Dublin, CA) (n = 600) or Heidelberg Spectralis (Heidelberg Engineering, Heidelberg, Germany) (n = 600) OCT devices. A method based on deep learning to automatically detect and quantify intraretinal cystoid fluid (IRC) and subretinal fluid (SRF) was developed. The performance of the algorithm in accurately identifying fluid localization and extent was evaluated against a manual consensus reading of 2 masked reading center graders. Performance of a fully automated method to accurately detect, differentiate, and quantify intraretinal and SRF using area under the receiver operating characteristics curves, precision, and recall. The newly designed, fully automated diagnostic method based on deep learning achieved optimal accuracy for the detection and quantification of IRC for all 3 macular pathologies with a mean accuracy (AUC) of 0.94 (range, 0.91-0.97), a mean precision of 0.91, and a mean recall of 0.84. The detection and measurement of SRF were also highly accurate with an AUC of 0.92 (range, 0.86-0.98), a mean precision of 0.61, and a mean recall of 0.81, with superior performance in neovascular AMD and RVO compared with DME, which was represented rarely in the population studied. High linear correlation was confirmed between automated and manual fluid localization and quantification, yielding an average Pearson's correlation coefficient of 0.90 for IRC and of 0.96 for SRF. Deep learning in retinal image analysis achieves excellent accuracy for the differential detection of retinal fluid types across the most prevalent exudative macular diseases and OCT devices. Furthermore, quantification of fluid achieves a high level of concordance with manual expert assessment. Fully automated analysis of retinal OCT images from clinical routine provides a promising horizon in improving accuracy and reliability of retinal diagnosis for research and clinical practice in ophthalmology.

6 December 2018 in Nature Communications
Verified
Journal Article
Open access
PDF file
LMLena Maier-Hein
Lena Maier-Hein
MEMatthias Eisenmann
Matthias Eisenmann
ARAnnika Reinke
Annika Reinke
SOSinan Onogur
Sinan Onogur
MSMarko Stankovic
Marko Stankovic
AKAnnette Kopp-Schneider
Annette Kopp-Schneider
International challenges have become the standard for validation of biomedical image analysis methods. Given their scientific impact, it is surprising that a critical analysis of common practices related to the organization of challenges has not yet been performed. In this paper, we present a comprehensive analysis of biomedical image analysis challenges conducted up to now. We demonstrate the importance of challenges and show that the lack of quality control has critical consequences. First, reproducibility and interpretation of the results is often hampered as only a fraction of relevant information is typically provided. Second, the rank of an algorithm is generally not robust to a number of variables such as the test data used for validation, the ranking scheme applied and the observers that make the reference annotations. To overcome these problems, we recommend best practice guidelines and define open research questions to be addressed in the future.

1 October 2009 in Medical Image Analysis
Verified
Journal Article
Closed access
MSMichiel Schaap
Michiel Schaap
CMCoert T. Metz
Coert T. Metz
TWTheo van Walsum
Theo van Walsum
AGAlina G. van der Giessen
Alina G. van der Giessen
AWAnnick C. Weustink
Annick C. Weustink
WNWiro J. Niessen
Wiro J. Niessen

26 February 2019 in IEEE Transactions on Medical Imaging
Verified
Journal Article
Closed access
HBHrvoje Bogunović
Hrvoje Bogunović
FVFreerk Venhuizen
Freerk Venhuizen
SKSophie Klimscha
Sophie Klimscha
SAStefanos Apostolopoulos
Stefanos Apostolopoulos
ABAlireza Bab-Hadiashar
Alireza Bab-Hadiashar
USUrsula Schmidt-Erfurth
Ursula Schmidt-Erfurth
Retinal swelling due to the accumulation of fluid is associated with the most vision-threatening retinal diseases. Optical coherence tomography (OCT) is the current standard of care in assessing the presence and quantity of retinal fluid and image-guided treatment management. Deep learning methods have made their impact across medical imaging and many retinal OCT analysis methods have been proposed. But it is currently not clear how successful they are in interpreting retinal fluid on OCT, which is due to the lack of standardized benchmarks. To address this, we organized a challenge RETOUCH in conjuction with MICCAI 2017, with eight teams participating. The challenge consisted of two tasks: fluid detection and fluid segmentation. It featured for the first time: all three retinal fluid types, with annotated images provided by two clinical centers, which were acquired with the three most common OCT device vendors from patients with two different retinal diseases. The analysis revealed that in the detection task, the performance on the automated fluid detection was within inter-grader variability. However, in the segmentation task, fusing the automated methods produced segmentations that were superior to all individual methods, indicating the need for further improvements in segmentation performance.