Key message: Using bulked segregant analysis of exome sequence, we fine-mapped the ABA-hypersensitive mutant ERA8 in a wheat backcross population to the TaMKK3-A locus of chromosome 4A. Preharvest sprouting (PHS) is the germination of mature grain on the mother plant when it rains before harvest. The ENHANCED RESPONSE TO ABA8 (ERA8) mutant increases seed dormancy and, consequently, PHS tolerance in soft white wheat ‘Zak.’ ERA8 was mapped to chromosome 4A in a Zak/‘ZakERA8’ backcross population using bulked segregant analysis of exome sequenced DNA (BSA-exome-seq). ERA8 was fine-mapped relative to mutagen-induced SNPs to a 4.6 Mb region containing 70 genes. In the backcross population, the ERA8 ABA-hypersensitive phenotype was strongly linked to a missense mutation in TaMKK3-A-G1093A (LOD 16.5), a gene associated with natural PHS tolerance in barley and wheat. The map position of ERA8 was confirmed in an ‘Otis’/ZakERA8 but not in a ‘Louise’/ZakERA8 mapping population. This is likely because Otis carries the same natural PHS susceptible MKK3-A-A660^S allele as Zak, whereas Louise carries the PHS-tolerant MKK3-A-C660^R allele. Thus, the variation for grain dormancy and PHS tolerance in the Louise/ZakERA8 population likely resulted from segregation of other loci rather than segregation for PHS tolerance at the MKK3 locus. This inadvertent complementation test suggests that the MKK3-A-G1093A mutation causes the ERA8 phenotype. Moreover, MKK3 was a known ABA signaling gene in the 70-gene 4.6 Mb ERA8 interval. None of these 70 genes showed the differential regulation in wild-type Zak versus ERA8 expected of a promoter mutation. Thus, the working model is that the ERA8 phenotype results from the MKK3-A-G1093A mutation.

A UV-induced albino strain of Monascus purpureus was subjected to electroporation in the presence of genomic DNA from a wild-type red strain of the fungus. Eight colonies expressed color after several weeks of growth. The growth rates of all eight color variants were significantly greater than the recipient and donor strains under some culture conditions. Spectrophotometric analysis of the pigments extracted from the color variants revealed the pigments had absorbance spectra different from the DNA donor strain. These color variants may have resulted from transformation with wild-type DNA, mutation reversion, or activation of alternative pathway(s)—i.e., new mutations—that resulted in pigment production.

Loss of crop genetic diversity due to modern plant breeding is an enduring global concern. The U.S. Pacific Northwest (PNW) is an important wheat (Triticum aestivum L.)‐producing region. We examined population structure and changes in genomic‐level and agroecosystem‐level genetic diversity of PNW wheat over the past 120 yr. Wheat varieties were slightly structured by spring and winter growth habit, but not by geographic origin or period of variety release. At the genomic level, we did not find long‐term shifts in gene diversity in either spring or winter wheat, but fluctuations were significant within market classes and within the most widely grown spring and winter varieties. Diversity in hard red spring (HRS) wheat peaked in 1970–1999 and since dropped below the level of varieties before 1930. Hard red winter (HRW) in 2000–2019 is more diverse than before 1930, whereas soft white spring (SWS) and soft white winter (SWW) are at the same level of diversity in 2000–2019 as they were before 1930. The most widely grown spring varieties had the lowest diversity in 1930–1969, whereas the most widely grown winter varieties had the lowest diversity in 2000–2019. At the agroecosystem level, Simpson's index of diversity (1 − D) has been on a rising trend since the 1990s as the dominance of acreages by a few varieties has become less common. Cultivation of multiple market classes and periodic incorporation of new germplasm by breeding programs have been able to maintain the quantitative level of genetic diversity in PNW wheat over time.