Daniela Nunes-Costa

Daniela Nunes-Costa

orcid

Research Focus & Metrics

Academic Career Length

12Years (2015-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 January 2016 in Tuberculosis
Verified
Journal Article
Closed access
DNDaniela Nunes-Costa
Daniela Nunes-Costa
Susana AlaricoSusana Alarico
Susana Alarico
MDMargareth Pretti Dalcolmo
Margareth Pretti Dalcolmo
MCMargarida Correia-Neves
Margarida Correia-Neves
Nuno EmpadinhasNuno Empadinhas
Nuno Empadinhas

1 September 2015 in Scientific Reports
Verified
Journal Article
Open access
PDF file
AMAna Maranha
Ana Maranha
PMPatrick Moynihan
Patrick Moynihan
VMVanessa Miranda
Vanessa Miranda
ELEva Correia Lourenço
Eva Correia Lourenço
DNDaniela Nunes-Costa
Daniela Nunes-Costa
Nuno EmpadinhasNuno Empadinhas
Nuno Empadinhas
Mycobacteria synthesize unique intracellular methylglucose lipopolysaccharides (MGLP) proposed to modulate fatty acid metabolism. In addition to the partial esterification of glucose or methylglucose units with short-chain fatty acids, octanoate was invariably detected on the MGLP reducing end. We have identified a novel sugar octanoyltransferase (OctT) that efficiently transfers octanoate to glucosylglycerate (GG) and diglucosylglycerate (DGG), the earliest intermediates in MGLP biosynthesis. Enzymatic studies, synthetic chemistry, NMR spectroscopy and mass spectrometry approaches suggest that, in contrast to the prevailing consensus, octanoate is not esterified to the primary hydroxyl group of glycerate but instead to the C6 OH of the second glucose in DGG. These observations raise important new questions about the MGLP reducing end architecture and about subsequent biosynthetic steps. Functional characterization of this unique octanoyltransferase, whose gene has been proposed to be essential for M. tuberculosis growth, adds new insights into a vital mycobacterial pathway, which may inspire new drug discovery strategies.

26 December 2016 in Glycobiology
Verified
Journal Article
Open access
PDF file
DNDaniela Nunes-Costa
Daniela Nunes-Costa
AMAna Maranha
Ana Maranha
MCMafalda Costa
Mafalda Costa
Susana AlaricoSusana Alarico
Susana Alarico
Nuno EmpadinhasNuno Empadinhas
Nuno Empadinhas
Despite the progressive decline in tuberculosis mortality, strains resistant to our dated antibiotics remain a global threat, as are the emerging nontuberculous mycobacteria, ubiquitous in natural and human environments. This pressing situation boosted by debilitated immune systems, chronic illness and the aged population calls for efficient strategies to fight these successful organisms, and identifying pathways critical for their survival is a crucial step towards this goal. In this context, the glycoside glucosylglycerate (GG) has been implicated in the adaptation of mycobacteria to nitrogen starvation and to thermal stress, and the key gene for GG synthesis has been considered essential for Mycobacterium tuberculosis growth. The many organisms we now know to have genes for GG metabolism opened new exciting avenues of research into its functions, hinting for example at hypothetical roles as an inter-cellular messenger among bacteria and in microbe–plant interactions, or at key roles in the global nitrogen cycle beyond what cyanobacteria and mycobacteria have taught us so far. Indeed, the insights into GG biology gained over the last decade have changed the perception of GG from a rare polysaccharide constituent to a widespread molecule with multiple functions and biosynthetic origins. It is now possible to build upon this knowledge and further explore its physiological importance in both pathogenic and environmentally relevant microorganisms. In particular, the vital roles of GG and of its important derivative the mycobacterial methylglucose lipopolysaccharide (MGLP) discussed here are now evident, making their metabolic links attractive targets for the development of new urgently needed antimycobacterial therapies.

1 May 2020 in Microbiology
Verified
Journal Article
Open access
Susana AlaricoSusana Alarico
Susana Alarico
DNDaniela Nunes-Costa
Daniela Nunes-Costa
ASAlexandra Silva
Alexandra Silva
MCMafalda Costa
Mafalda Costa
SMSandra Macedo-Ribeiro
Sandra Macedo-Ribeiro
Nuno EmpadinhasNuno Empadinhas
Nuno Empadinhas
Mycobacterium hassiacum is so far the most thermophilic among mycobacteria as it grows optimally at 50 °C and up to 65 °C in a glycerol-based medium, as verified in this study. Since this and other nontuberculous mycobacteria (NTM) thrive in diverse natural and artificial environments, from where they may access and infect humans, we deemed essential to probe M. hassiacum resistance to heat, a strategy routinely used to control microbial growth in water-supply systems, as well as in the food and drink industries. In addition to possibly being a threat in its own right in rare occasions, M. hassiacum is also a good surrogate for studying other NTM species more often associated with opportunistic infection, namely Mycobacterium avium and Mycobacterium abscessus as well as their strictly pathogenic counterparts Mycobacterium tuberculosis and Mycobacterium leprae . In this regard, this thermophilic species is likely to be useful as a source of stable proteins that may provide more detailed structures of potential drug targets. Here, we investigate M. hassiacum growth at near-pasteurization temperatures and at different pHs and also characterize its thermostable glucosyl-3-phosphoglycerate synthase (GpgS), an enzyme considered essential for M. tuberculosis growth and associated with both nitrogen starvation and thermal stress in different NTM species.

13 July 2024 in Microorganisms
Verified
Journal Article
Open access
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AMAna Maranha
Ana Maranha
Susana AlaricoSusana Alarico
Susana Alarico
DNDaniela Nunes-Costa
Daniela Nunes-Costa
IMInês Melo-Marques
Inês Melo-Marques
IRInês Roxo
Inês Roxo
Nuno EmpadinhasNuno Empadinhas
Nuno Empadinhas
The prospect of drinking water serving as a conduit for gut bacteria, artificially selected by disinfection strategies and a lack of monitoring at the point of use, is concerning. Certain opportunistic pathogens, notably some nontuberculous mycobacteria (NTM), often exceed coliform bacteria levels in drinking water, posing safety risks. NTM and other microbiota resist chlorination and thrive in plumbing systems. When inhaled, opportunistic NTM can infect the lungs of immunocompromised or chronically ill patients and the elderly, primarily postmenopausal women. When ingested with drinking water, NTM often survive stomach acidity, reach the intestines, and migrate to other organs using immune cells as vehicles, potentially colonizing tumor tissue, including in breast cancer. The link between the microbiome and cancer is not new, yet the recognition of intratumoral microbiomes is a recent development. Breast cancer risk rises with age, and NTM infections have emerged as a concern among breast cancer patients. In addition to studies hinting at a potential association between chronic NTM infections and lung cancer, NTM have also been detected in breast tumors at levels higher than normal adjacent tissue. Evaluating the risks of continued ingestion of contaminated drinking water is paramount, especially given the ability of various bacteria to migrate from the gut to breast tissue via entero-mammary pathways. This underscores a pressing need to revise water safety monitoring guidelines and delve into hormonal factors, including addressing the disproportionate impact of NTM infections and breast cancer on women and examining the potential health risks posed by the cryptic and unchecked microbiota from drinking water.

25 June 2019 in mBio
Verified
Journal Article
Open access
PDF file
JMJosé A. Manso
José A. Manso
DNDaniela Nunes-Costa
Daniela Nunes-Costa
SMSandra Macedo-Ribeiro
Sandra Macedo-Ribeiro
Nuno EmpadinhasNuno Empadinhas
Nuno Empadinhas
PPPereira Pedro
Pereira Pedro
The discovery of novel enzymes involved in antibiotic biosynthesis pathways is currently a topic of utmost importance. The high levels of antibiotic resistance detected worldwide threaten our ability to combat infections and other 20th-century medical achievements, namely, organ transplantation or cancer chemotherapy. We have identified and characterized a unique family of enzymes capable of phosphorylating glucosamine to glucosamine-6-phosphate, a crucial molecule directly involved in the activation of antibiotic production pathways in Actinobacteria , nature’s main source of antimicrobials. The consensus sequence identified for these glucosamine kinases will help establish a molecular fingerprint to reveal yet-uncharacterized sequences in antibiotic producers, which should have an important impact in biotechnological and biomedical applications, including the enhancement and optimization of antibiotic production.