Cyanobacterial blooms have been increasingly detected in estuaries and freshwater tidal rivers. To enhance detailed monitoring, an efficient approach to detecting algal blooms through remote sensing is needed to focus more detailed monitoring focused on cyanobacteria. In this study, we compared different remote sensing processing methods to determine an efficient approach to mapping chlorophyll-a. Using a subset of paired chlorophyll-a observations with Sentinel-2 imagery (2015–2022), with sites located in the Chesapeake Bay and Indian River selected along gradients of salinity, turbidity, and trophic status, we compared the combined performance of two different atmospheric processing methods (Acolite, Polymer) and a suite of empirical (band ratio, spectral shape indices) and machine learning algorithms for chlorophyll-a prediction. Acolite outperformed Polymer, resulting in 176 observation points, compared to 106 observation points from Polymer, and a greater range in chlorophyll-a values (0–74 μg/L from Acolite compared to 0–36 μg/L from Polymer), although Polymer showed more responsiveness at lower chlorophyll-a levels. Two algorithms performed best in predicting chlorophyll-a, as well as trophic state and HABs risk classes: the machine learning mixture density network (MDN) approach and the one band-ratio approach (Mishra).

Researchers and environmental managers need big datasets spanning long time periods to accurately assess current and historical water quality conditions in fresh and estuarine waters. Using remote sensing data, we can survey many water bodies simultaneously and evaluate water quality conditions with greater frequency. The combination of existing and historical water quality data with remote sensing imagery into a unified database allows researchers to improve remote sensing algorithms and improves understanding of mechanisms causing blooms. We report on the development of a water quality database “EstuarySAT” which combines data from the Sentinel-2 multi-spectral instrument (MSI) remote sensing platform and water quality data throughout the coastal USA. EstuarySAT builds upon an existing database and set of methods developed by the creators of AquaSat, whose region of interest is primarily larger freshwater lakes in the USA. Following the same basic methods, EstuarySAT utilizes open-source tools: R v. 3.24+ (statistical software), Python (dynamic programming environment), and Google Earth Engine (GEE) to develop a combined water quality data and remote sensing imagery database (EstuarySAT) for smaller coastal estuarine and freshwater tidal riverine systems. EstuarySAT fills a data gap that exists between freshwater and estuarine water bodies. We are able to evaluate smaller systems due to the higher spatial resolution of Sentinel-2 (10 m pixel image resolution) vs. the Landsat platform used by AquaSat (30 m pixel resolution). Sentinel-2 also has a more frequent revisit (overpass) schedule of every 5 to 10 days vs. Landsat 7 which is every 17 days. EstuarySAT incorporates publicly available water quality data from 23 individual water quality data sources spanning 1984–2021 and spatially matches them with Sentinel-2 imagery from 2015–2021. EstuarySAT currently contains 299,851 matched observations distributed across the coastal USA. EstuarySAT’s primary focus is on collecting chlorophyll data; however, it also contains other ancillary water quality data, including temperature, salinity, pH, dissolved oxygen, dissolved organic carbon, and turbidity (where available). As compared to other ocean color databases used for developing predictive chlorophyll algorithms, this coastal database contains spectral profiles more typical of CDOM-dominated systems. This database can assist researchers and managers in evaluating algal bloom causes and predicting the occurrence of future blooms.