Soil organic matter (SOM) is essential for assessing land quality and enhancing soil fertility. Understanding SOM spatial and temporal changes is crucial for sustainable soil management. This study investigates the spatial and temporal variations and influencing factors of SOM content in the Songnen Plain (SNP) and Sanjiang Plain (SJP) of Heilongjiang Province, China, based on high-precision SOC content data (RMSE = 4.84 g/kg⁻¹, R² = 0.75, RPIQ = 2.43) from 1984 to 2021, with geostatistical analyses and geodetector models. This study aims to quantitatively reveal and compare the long-term spatial and temporal characteristics of SOM changes and their influencing factors across these two plains. The results show that SOM content in both plains has decreased over the past 37 years. In the SNP, the average SOM decreased from 48.61 g/kg to 45.6 g/kg, representing a reduction of 3.01 g/kg, or a 6.10% decrease; SOM decreased spatially from northeast to southwest, covering 63.1% of the area. In the SJP, the average SOM declined from 48.41 g/kg to 44.31 g/kg, a decrease of 4.1 g/kg, or an 8.50% decrease; no pronounced spatial pattern was observed, but the declining area comprises 67.49%. Changing SOM hotspots are concentrated in southern SNP and central and northwestern SJP, showing clear heterogeneity across counties. Geodetector model analysis indicates annual mean temperature as the primary driver of SOM variations in SNP; while elevation is the main driver in SJP, the combined explanatory power of multiple factors surpasses individual ones. There is a positive correlation between SOM and temperature in SNP, and policy protection positively influences SOM in both plains. These findings provide insights into the differential protection of SOM in SNP and SJP.