Thomas Blacker

Dr. Thomas Blacker


Research Focus & Metrics

Academic Career Length

18Years (2009-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 December 2012 in Best Practice & Research Clinical Endocrinology & Metabolism
Verified
Journal Article
Open access
LOLaura D. Osellame
Laura D. Osellame
TBThomas Blacker
Thomas Blacker
MDMichael R. Duchen
Michael R. Duchen
Mitochondria are membrane bound organelles present in almost all eukaryotic cells. Responsible for orchestrating cellular energy production, they are central to the maintenance of life and the gatekeepers of cell death. Thought to have originated from symbiotic ancestors, they carry a residual genome as mtDNA encoding 13 proteins essential for respiratory chain function. Mitochondria comprise an inner and outer membrane that separate and maintain the aqueous regions, the intermembrane space and the matrix. Mitochondria contribute to many processes central to cellular function and dysfunction including calcium signalling, cell growth and differentiation, cell cycle control and cell death. Mitochondrial shape and positioning in cells is crucial and is tightly regulated by processes of fission and fusion, biogenesis and autophagy, ensuring a relatively constant mitochondrial population. Mitochondrial dysfunction is implicated in metabolic and age related disorders, neurodegenerative diseases and ischemic injury in heart and brain.

29 May 2014 in Nature Communications
Verified
Journal Article
Open access
PDF file
TBThomas Blacker
Thomas Blacker
ZMZoe F. Mann
Zoe F. Mann
JGJonathan E. Gale
Jonathan E. Gale
MZMathias Ziegler
Mathias Ziegler
ABAngus J. Bain
Angus J. Bain
MDMichael R. Duchen
Michael R. Duchen
NAD is a key determinant of cellular energy metabolism. In contrast, its phosphorylated form, NADP, plays a central role in biosynthetic pathways and antioxidant defence. The reduced forms of both pyridine nucleotides are fluorescent in living cells but they cannot be distinguished, as they are spectrally identical. Here, using genetic and pharmacological approaches to perturb NAD(P)H metabolism, we find that fluorescence lifetime imaging (FLIM) differentiates quantitatively between the two cofactors. Systematic manipulations to change the balance between oxidative and glycolytic metabolism suggest that these states do not directly impact NAD(P)H fluorescence decay rates. The lifetime changes observed in cancers thus likely reflect shifts in the NADPH/NADH balance. Using a mathematical model, we use these experimental data to quantify the relative levels of NADH and NADPH in different cell types of a complex tissue, the mammalian cochlea. This reveals NADPH-enriched populations of cells, raising questions about their distinct metabolic roles.

1 November 2016 in Free Radical Biology and Medicine
Verified
Journal Article
Open access
TBThomas Blacker
Thomas Blacker
MDMichael R. Duchen
Michael R. Duchen
The redox states of the NAD and NADP pyridine nucleotide pools play critical roles in defining the activity of energy producing pathways, in driving oxidative stress and in maintaining antioxidant defences. Broadly speaking, NAD is primarily engaged in regulating energy-producing catabolic processes, whilst NADP may be involved in both antioxidant defence and free radical generation. Defects in the balance of these pathways are associated with numerous diseases, from diabetes and neurodegenerative disease to heart disease and cancer. As such, a method to assess the abundance and redox state of these separate pools in living tissues would provide invaluable insight into the underlying pathophysiology. Experimentally, the intrinsic fluorescence of the reduced forms of both redox cofactors, NADH and NADPH, has been used for this purpose since the mid-twentieth century. In this review, we outline the modern implementation of these techniques for studying mitochondrial redox state in complex tissue preparations. As the fluorescence spectra of NADH and NADPH are indistinguishable, interpreting the signals resulting from their combined fluorescence, often labelled NAD(P)H, can be complex. We therefore discuss recent studies using fluorescence lifetime imaging microscopy (FLIM) which offer the potential to discriminate between the two separate pools. This technique provides increased metabolic information from cellular autofluorescence in biomedical investigations, offering biochemical insights into the changes in time-resolved NAD(P)H fluorescence signals observed in diseased tissues.

1 September 2015 in Cell Metabolism
Verified
Journal Article
Closed access
ANAlexander G. Nickel
Alexander G. Nickel
AHAlbrecht von Hardenberg
Albrecht von Hardenberg
MHMathias Hohl
Mathias Hohl
JLJoachim R. Löffler
Joachim R. Löffler
MKMichael Kohlhaas
Michael Kohlhaas
CMCristoph Maack
Cristoph Maack

4 April 2016 in EMBO Molecular Medicine
Verified
Journal Article
Open access
PDF file
ATAnna Tosatto
Anna Tosatto
RSRoberta Sommaggio
Roberta Sommaggio
CKCarsten Kummerow
Carsten Kummerow
RBRobert B Bentham
Robert B Bentham
TBThomas Blacker
Thomas Blacker
Cristina MammucariCristina Mammucari
Cristina Mammucari
Triple‐negative breast cancer (TNBC) represents the most aggressive breast tumor subtype. However, the molecular determinants responsible for the metastatic TNBC phenotype are only partially understood. We here show that expression of the mitochondrial calcium uniporter (MCU), the selective channel responsible for mitochondrial Ca2+ uptake, correlates with tumor size and lymph node infiltration, suggesting that mitochondrial Ca2+ uptake might be instrumental for tumor growth and metastatic formation. Accordingly, MCU downregulation hampered cell motility and invasiveness and reduced tumor growth, lymph node infiltration, and lung metastasis in TNBC xenografts. In MCU‐silenced cells, production of mitochondrial reactive oxygen species (mROS) is blunted and expression of the hypoxia‐inducible factor‐1α (HIF‐1α) is reduced, suggesting a signaling role for mROS and HIF‐1α, downstream of mitochondrial Ca2+. Finally, in breast cancer mRNA samples, a positive correlation of MCU expression with HIF‐1α signaling route is present. Our results indicate that MCU plays a central role in TNBC growth and metastasis formation and suggest that mitochondrial Ca2+ uptake is a potential novel therapeutic target for clinical intervention. Synopsis MCU is the highly selective channel responsible for mitochondrial Ca2+ uptake. MCU expression is shown here to correlate with breast cancer progression. Depletion of MCU reduces tumor growth and metastasis formation via suppression of ROS production and inhibition of HIF‐1α signaling. MCU expression correlates with breast tumor size and lymph node infiltration MCU silencing reduces TNBC cell migration and invasion MCU deletion reduces in vivo tumor growth and metastasis formation MCU silencing inhibits ROS–HIF‐1α signaling route

1 February 2018 in Molecular Cell
Verified
Journal Article
Open access
EGEdoardo Gaude
Edoardo Gaude
CSChristina Schmidt
Christina Schmidt
PGPayam A. Gammage
Payam A. Gammage
ADAurelien Dugourd
Aurelien Dugourd
TBThomas Blacker
Thomas Blacker
CFChristian Frezza
Christian Frezza
The bioenergetics and molecular determinants of the metabolic response to mitochondrial dysfunction are incompletely understood, in part due to a lack of appropriate isogenic cellular models of primary mitochondrial defects. Here, we capitalize on a recently developed cell model with defined levels of m.8993T>G mutation heteroplasmy, mTUNE, to investigate the metabolic underpinnings of mitochondrial dysfunction. We found that impaired utilization of reduced nicotinamide adenine dinucleotide (NADH) by the mitochondrial respiratory chain leads to cytosolic reductive carboxylation of glutamine as a new mechanism for cytosol-confined NADH recycling supported by malate dehydrogenase 1 (MDH1). We also observed that increased glycolysis in cells with mitochondrial dysfunction is associated with increased cell migration in an MDH1-dependent fashion. Our results describe a novel link between glycolysis and mitochondrial dysfunction mediated by reductive carboxylation of glutamine.