We observed interannual changes in the temperature and salinity of the surface layer of the Adriatic Sea when measured during the period 2005–2020. We observed non-stationarity and a positive linear trend in the series of mixed layer depth, heat storage, and potential energy anomalies. This non-stationarity was related to the climate regime that prevailed between 2011 and 2017. We observed significant changes in the interannual variability of salinity above and below the mixed layer depth and a positive difference in the surface barrier layer. In an effort to reconstruct the cause of this phenomenon, a multi-stage investigation was conducted. The first suspected culprit was the change in wind regime over the Mediterranean and Northeast Atlantic regions in September. Using the growing neural gas algorithm, September wind fields over the past 40 years were classified into nine distinct patterns. Further analysis of the CTD data indicated an increase in heat storage, a physical property of the Adriatic Sea known to be strongly influenced by the inflow of warm water masses controlled by the bimodal oscillating system (BiOS). The observed increase in salinity confirmed the assumption that BiOS activity affects heat storage. Unexpectedly, this analysis showed that an inverse vertical salinity profile was present during the summer months of 2015, 2017, and 2020, which can only be explained by salinity changes being a dominant factor. In addition, the aforementioned wind regime caused an increase in energy loss through latent energy dissipation, contributing to an even larger increase in salinity. While changes in the depth of the mixed layer in the Adriatic are usually due to temperature changes, this phenomenon was primarily caused by abrupt changes in salinity due to a combination of BiOS and local factors. This is the first record of such an event.

This study gives the first data on the body and beak morphometric characteristics, age, and genetic structure of neon flying squid, a rarely caught cephalopod in the Adriatic Sea. We identified specimens as recently resurrected Ommastrephes caroli species using two mitochondrial markers, 16S ribosomal RNA gene and cytochrome c oxidase subunit I gene. Overall, 23 juveniles (3 females, 3 males, and 17 unsexed), with a dorsal mantle range of 65–152 mm, were caught in September 2020 in the waters of the Korčula Channel, island of Palagruža, and island of Jabuka, thus providing the most abundant sample of this species in the Mediterranean waters. The length–weight relationship showed an isometric growth. The results of the beak/length regressions suggest hood length is a useful characteristic for biomass estimation studies, as it showed a good linear fit to the dorsal mantle length. Statolith growth increments were easily visible and statolith microstructure analysis was successfully used to determine the age of 22 individuals. The estimated age ranged from 36 to 64 days (mean = 48 days). The back-calculation analysis showed that the squid hatched during July and August 2020, indicating that O. caroli spawns during the warmer, summertime period. Considering the size and age of the caught individuals, the Adriatic Sea could represent a potential feeding ground for this species. The genetic structure analyses indicate the existence of separate Atlantic and Mediterranean/Adriatic subclusters; however, this warrants further investigation.