Dimitris Hatzinikolaou

Prof. Dr. Dimitris Hatzinikolaou

Department of Biology, National and Kapodistrian University of Athens, Athens, Greece
orcid

Research Focus & Metrics

Academic Career Length

23Years (2004-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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4 August 2016 in Biotechnology for Biofuels
Verified
Journal Article
Open access
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SMSarah Morais
Sarah Morais
JSJohanna Stern
Johanna Stern
AKAmaranta Kahn
Amaranta Kahn
AGAnastasia Galanopoulou
Anastasia Galanopoulou
SYShahar Yoav
Shahar Yoav
Edward BayerEdward Bayer
Edward Bayer
The concerted action of three complementary cellulases from Clostridium thermocellum, engineered to be stable at elevated temperatures, was examined on a cellulosic substrate and compared to that of the wild-type enzymes. Exoglucanase Cel48S and endoglucanase Cel8A, both key elements of the natural cellulosome from this bacterium, were engineered previously for increased thermostability, either by SCHEMA, a structure-guided, site-directed protein recombination method, or by consensus-guided mutagenesis combined with random mutagenesis using error-prone PCR, respectively. A thermostable β-glucosidase BglA mutant was also selected from a library generated by error-prone PCR that will assist the two cellulases in their methodic deconstruction of crystalline cellulose. The effects of a thermostable scaffoldin versus those of a largely mesophilic scaffoldin were also examined. By improving the stability of the enzyme subunits and the structural component, we aimed to improve cellulosome-mediated deconstruction of cellulosic substrates. The results demonstrate that the combination of thermostable enzymes as free enzymes and a thermostable scaffoldin was more active on the cellulosic substrate than the wild-type enzymes. Significantly, “thermostable” designer cellulosomes exhibited a 1.7-fold enhancement in cellulose degradation compared to the action of conventional designer cellulosomes that contain the respective wild-type enzymes. For designer cellulosome formats, the use of the thermostabilized scaffoldin proved critical for enhanced enzymatic performance under conditions of high temperatures. Simple improvement in the activity of a given enzyme does not guarantee its suitability for use in an enzyme cocktail or as a designer cellulosome component. The true merit of improvement resides in its ultimate contribution to synergistic action, which can only be determined experimentally. The relevance of the mutated thermostable enzymes employed in this study as components in multienzyme systems has thus been confirmed using designer cellulosome technology. Enzyme integration via a thermostable scaffoldin is critical to the ultimate stability of the complex at higher temperatures. Engineering of thermostable cellulases and additional lignocellulosic enzymes may prove a determinant parameter for development of state-of-the-art designer cellulosomes for their employment in the conversion of cellulosic biomass to soluble sugars.

5 December 2020 in Pathogens
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AVAdamantia Varympopi
Adamantia Varympopi
ADAnastasia Dimopoulou
Anastasia Dimopoulou
ITIoannis Theologidis
Ioannis Theologidis
THEODORA KARAMANIDOUTHEODORA KARAMANIDOU
THEODORA KARAMANIDOU
Alexandra KerouAlexandra Kerou
Alexandra Kerou
NSNicholas Skandalis
Nicholas Skandalis
Copper nanoparticles (CuNPs) can offer an alternative to conventional copper bactericides and possibly slow down the development of bacterial resistance. This will consequently lower the accumulation rate of copper to soil and water and lower the environmental and health burden imposed by copper application. Physical and chemical methods have been reported to synthesize CuNPs but their use as bactericides in plants has been understudied. In this study, two different CuNPs products have been developed, CuNP1 and CuNP2 in two respective concentrations (1500 ppm or 300 ppm). Both products were characterized using Dynamic Light Scattering, Transmission Electron Microscopy, Attenuated Total Reflection measurements, X-ray Photoelectron Spectroscopy, X-ray Diffraction and Scattering, and Laser Doppler Electrophoresis. They were evaluated for their antibacterial efficacy in vitro against the gram-negative species Agrobacterium tumefaciens, Dickeya dadantii, Erwinia amylovora, Pectobacterium carotovorum, Pseudomonas corrugata, Pseudomonas savastanoi pv. savastanoi, and Xanthomonas campestris pv. campestris. Evaluation was based on comparisons with two commercial bactericides: Kocide (copper hydroxide) and Nordox (copper oxide). CuNP1 inhibited the growth of five species, restrained the growth of P. corrugata, and had no effect in X. c. pv campestris. MICs were significantly lower than those of the commercial formulations. CuNP2 inhibited the growth of E. amylovora and restrained growth of P. s. pv. savastanoi. Again, its overall activity was higher compared to commercial formulations. An extensive in vitro evaluation of CuNPs that show higher potential compared to their conventional counterpart is reported for the first time and suggests that synthesis of stable CuNPs can lead to the development of low-cost sustainable commercial products.

28 February 2019 in Biotechnology for Biofuels
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Journal Article
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AKAmaranta Kahn
Amaranta Kahn
SMSarah Morais
Sarah Morais
AGAnastasia Galanopoulou
Anastasia Galanopoulou
DCDaehwan Chung
Daehwan Chung
NSNicholas S. Sarai
Nicholas S. Sarai
Edward BayerEdward Bayer
Edward Bayer
Renewable energy has become a field of high interest over the past decade, and production of biofuels from cellulosic substrates has a particularly high potential as an alternative source of energy. Industrial deconstruction of biomass, however, is an onerous, exothermic process, the cost of which could be decreased significantly by use of hyperthermophilic enzymes. An efficient way of breaking down cellulosic substrates can also be achieved by highly efficient enzymatic complexes called cellulosomes. The modular architecture of these multi-enzyme complexes results in substrate targeting and proximity-based synergy among the resident enzymes. However, cellulosomes have not been observed in hyperthermophilic bacteria. Here, we report the design and function of a novel hyperthermostable “designer cellulosome” system, which is stable and active at 75 °C. Enzymes from Caldicellulosiruptor bescii, a highly cellulolytic hyperthermophilic anaerobic bacterium, were selected and successfully converted to the cellulosomal mode by grafting onto them divergent dockerin modules that can be inserted in a precise manner into a thermostable chimaeric scaffoldin by virtue of their matching cohesins. Three pairs of cohesins and dockerins, selected from thermophilic microbes, were examined for their stability at extreme temperatures and were determined stable at 75 °C for at least 72 h. The resultant hyperthermostable cellulosome complex exhibited the highest levels of enzymatic activity on microcrystalline cellulose at 75 °C, compared to those of previously reported designer cellulosome systems and the native cellulosome from Clostridium thermocellum. The functional hyperthermophilic platform fulfills the appropriate physico-chemical properties required for exothermic processes. This system can thus be adapted for other types of thermostable enzyme systems and could serve as a basis for a variety of cellulolytic and non-cellulolytic industrial objectives at high temperatures.

10 March 2011 in Journal of Biotechnology
Verified
Journal Article
Closed access
GAGeorge E. Anasontzis
George E. Anasontzis
AZAnastasia Zerva
Anastasia Zerva
Panagiota StathopoulouPanagiota Stathopoulou
Panagiota Stathopoulou
Kosmas HaralampidisKosmas Haralampidis
Kosmas Haralampidis
George DiallinasGeorge Diallinas
George Diallinas
Dimitris HatzinikolaouDimitris Hatzinikolaou
Dimitris Hatzinikolaou

Verified
Journal Article
Open access
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AVAdamantia Varympopi
Adamantia Varympopi
ADAnastasia Dimopoulou
Anastasia Dimopoulou
DPDimitris Papafotis
Dimitris Papafotis
PAPavlos Avramidis
Pavlos Avramidis
ISIoannis Sarris
Ioannis Sarris
NSNicholas Skandalis
Nicholas Skandalis
Copper-based bactericides have appeared as a new tool in crop protection and offer an effective solution to combat bacterial resistance. In this work, two copper nanoparticle products that were previously synthesized and evaluated against major bacterial and fungal pathogens were tested on their ability to control the bacterial spot disease of tomato. Growth of Xanthomonas campestris pv. vesicatoria, the causal agent of the disease, was significantly suppressed by both nanoparticles, which had superior function compared to conventional commercial formulations of copper. X-ray fluorescence spectrometry measurements in tomato leaves revealed that bioavailability of copper is superior in the case of nanoparticles compared to conventional formulations and is dependent on synthesis rather than size. This is the first report correlating bioavailability of copper to nanoparticle efficacy.

1 June 2014 in Bioresource Technology
Verified
Journal Article
Closed access
AZAnastasia Zerva
Anastasia Zerva
ASAlexander L. Savvides
Alexander L. Savvides
EKEfstathios A. Katsifas
Efstathios A. Katsifas
AKAmalia D. Karagouni
Amalia D. Karagouni
Dimitris HatzinikolaouDimitris Hatzinikolaou
Dimitris Hatzinikolaou