Iron is an essential nutrient required for plant growth and development. The availability of iron might also influence disease resistance in plants. However, the molecular mechanisms involved in the plant response to iron availability and immunity have been investigated separately from each other. In this work, we found that exposure of rice plants to high iron enhances resistance to infection by the fungal pathogenMagnaporthe oryzae, the causal agent of blast disease. RNA-Seq analysis revealed that blast resistance in iron-treated rice plants was associated with superinduction of defense-related genes during pathogen infection, includingPathogenesis-Relatedgenes. The expression level of genes involved in the biosynthesis of phytoalexins, both diterpene phytoalexins and the flavonoid phytoalexin sakuranetin, was also higher in iron-treated plants compared with control plants, which correlated well with increased levels of phytoalexins in these plants duringM. oryzaeinfection. Upon pathogen infection, lipid peroxidation was also higher in iron-treated plants compared with non-treated plants. We also show thatM. oryzaeinfection modulates the expression of genes that play a pivotal role in the maintenance of iron homeostasis. Histochemical analysis ofM. oryzae-infected leaves revealed colocalization of iron and reactive oxygen species in cells located in the vicinity of fungal penetration sites (e.g. appressoria) in rice plants that have been exposed to iron. Together these findings support that ferroptosis plays a role in the response of iron-treated rice plants to infection by virulentM. oryzae.Understanding interconnected regulations between iron signaling and immune signaling in rice holds great potential for developing novel strategies to improve blast resistance in rice.

Rice is one of the most important crops in the world, and its production is severely affected by the rice blast disease caused by the fungus Magnaporthe oryzae. Several major blast resistance genes and QTLs associated with blast resistance have been described and mostly identified in indica rice varieties. In this work, we report the obtention of a blast-resistant rice breeding line derived from crosses between the resistant indica variety CT13432 and the japonica elite cultivar JSendra (highly susceptible to blast). The breeding line, named COPSEMAR9, was found to exhibit resistance to leaf blast and panicle blast, as demonstrated by disease assays under controlled and field conditions. Furthermore, a high-quality genome sequence of the blast-resistant breeding line was obtained using a strategy that combines short-read sequencing (Illumina sequencing) and long-read sequencing (Pacbio sequencing). The use of a whole-genome approach allowed the fine mapping of DNA regions of indica and japonica origin present in the COPSEMAR9 genome and the identification of parental gene regions potentially contributing to blast resistance in the breeding line. Rice blast resistance genes (including Pi33 derived from the resistant parent) and defense-related genes in the genome of COPSEMAR9 were identified. Whole-genome analyses also revealed the presence of microRNAs (miRNAs) with a known function in the rice response to M. oryzae infection in COPSEMAR9, which might also contribute to its phenotype of blast resistance. From this study, the genomic information and analysis methods provide valuable knowledge that will be useful in breeding programs for blast resistance in japonica rice cultivars.

Non-trellised culture of tomato is gaining interest among farmers cultivating long shelf-life (LSL) landraces because of the reduction in production costs. This cropping system can benefit from the selection of determinate growth genotypes, mirroring the advancements achieved in processing tomatoes. With this aim, and profiting from the natural variation found within the Penjar landrace, we selected traditional determinate genotypes and breed novel lines carrying both the self-pruning (sp) and the compound inflorescence (s) mutations. Traditional genotypes and breeding lines were compared to commercial controls in a three multi-locality trial and under two irrigation regimes (normal watered, 100% ET_c; and water deficit, 50% ET_c). Water use efficiency, harvest index, yield and fruit quality traits were studied at harvest. During postharvest, the effects of genotype and management practices on shelf life were assessed under different storage conditions (controlled conditions/cold storage/farmer facilities). All genotypes used water more efficiently under water deficit irrigation than under normal irrigation. Harvest index was improved in the determinate genotypes and was neither affected by locality nor by irrigation factors. Breeding lines showed yields similar to the controls and the traditional ones; however, they displayed a plant architecture that facilitated their management. They also presented higher postharvest shelf life than controls and traditional lines. Shelf life was significantly affected by genotype (G), locality (L, at early stages), and irrigation regime (I, at later stages), with the contribution of the genotype to the phenotypic variance increasing along the postharvest. Low watering increased shelf life in some genotypes while cold storage and high humidity conditions impeded the long shelf-life trait. Overall, sunscald incidence and percentage of unripe fruits when using a single harvest strategy are the major limitations for non-trellised culture of Penjar tomato. In conclusion, this study sheds light on the main aspects of management and on breeding targets to promote a non-trellised culture of Penjar tomato in combination with optimal water use efficiency.

Cabbage (Brassica oleracea), a crop of major economic importance worldwide, is affected by numerous diseases, which are caused by a wide range of microorganisms, including fungi, oomycetes, bacteria, and viruses, which lead to important losses in yield and quality. The increasing availability of reference genomes of plant-associated microbes together with recent advances in metagenomic approaches provide new opportunities to identify microbes linked to distinct symptomatology in Brassica leaves. In this study, shotgun metagenomics was used to investigate the microbial community in leaves of B. oleracea plants from agricultural farmlands. Compared with conventional techniques based on culture-based methods, whole-genome shotgun sequencing allows the reliable identification of the microbial population inhabiting a plant tissue at the species level. Asymptomatic and symptomatic leaves showing different disease symptoms were examined. In the asymptomatic leaves, Xanthomonas species were the most abundant taxa. The relative abundance of bacterial and fungal communities varied depending on disease symptoms on the leaf. The microbiome of the leaves showing mild to severe levels of disease was enriched in bacterial populations (Sphingomonas, Methylobacterium, Paracoccus) and to a lesser degree in some fungal taxa, such as Alternaria and Colletotrichum (e.g., in leaves with high levels of necrotic lesions). Sclerotinia species were highly abundant in severely damaged leaves (S. sclerotium, S. trifolium, S. bolearis), followed by Botrytis species. The common and specific bacterial and fungal species associated to disease symptoms were identified. Finally, the analysis of the gene functions in the metagenomic data revealed enrichment in carbohydrate-active enzymes potentially involved in pathogenicity, whose distribution also varied among disease severity groups. Understanding the B. oleracea leaf microbiome in agricultural ecosystems will pave the way for the efficient management of diseases in this crop.