Tropical rainforests store enormous amounts of carbon, the protection of which represents a vital component of efforts to mitigate global climate change. Currently, tropical forest conservation, science, policies, and climate mitigation actions focus predominantly on reducing carbon emissions from deforestation alone. However, every year vast areas of the humid tropics are disturbed by selective logging, understory fires, and habitat fragmentation. There is an urgent need to understand the effect of such disturbances on carbon stocks, and how stocks in disturbed forests compare to those found in undisturbed primary forests as well as in regenerating secondary forests. Here, we present the results of the largest field study to date on the impacts of human disturbances on above and belowground carbon stocks in tropical forests. Live vegetation, the largest carbon pool, was extremely sensitive to disturbance: forests that experienced both selective logging and understory fires stored, on average, 40% less aboveground carbon than undisturbed forests and were structurally similar to secondary forests. Edge effects also played an important role in explaining variability in aboveground carbon stocks of disturbed forests. Results indicate a potential rapid recovery of the dead wood and litter carbon pools, while soil stocks (0–30 cm) appeared to be resistant to the effects of logging and fire. Carbon loss and subsequent emissions due to human disturbances remain largely unaccounted for in greenhouse gas inventories, but by comparing our estimates of depleted carbon stocks in disturbed forests with Brazilian government assessments of the total forest area annually disturbed in the Amazon, we show that these emissions could represent up to 40% of the carbon loss from deforestation in the region. We conclude that conservation programs aiming to ensure the long‐term permanence of forest carbon stocks, such as REDD+, will remain limited in their success unless they effectively avoid degradation as well as deforestation.

The greenhouse gases concentration in the atmosphere have significantly increased since the beginning of the Industrial Revolution. The most important greenhouse gases are CO2, CH4 and N2O, with CH4 and N2O presenting global warming potentials 25 and 298 times higher than CO2, respectively. Most of the N2O emissions take place in soils and are related with agricultural activities. So, this review article aimed at presenting the mechanisms of N2O formation and emission in agricultural soils, as well as gathering and discussing information on how soil management practices may be used to reduce such emissions. The N2O formation in the soil occurs mainly through nitrification and denitrification processes, which are influenced by soil moisture, temperature, oxygen concentration, amount of available organic carbon and nitrogen and soil C/N ratio. Among these factors, those related to soil could be easily altered by management practices. Therefore, understanding the processes of N2O formation in soils and the factors influencing these emissions is fundamental to develop efficient strategies to reduce N2O emissions in agricultural soils.

The use of crop residues as a bioenergy feedstock is considered a potential strategy to mitigate greenhouse gas (GHG) emissions. However, indiscriminate harvesting of crop residues can induce deleterious effects on soil functioning, plant growth and other ecosystem services. Here, we have summarized the information available in the literature to identify and discuss the main trade-offs and synergisms involved in crop residue management for bioenergy production. The data consistently showed that crop residue harvest and the consequent lower input of organic matter into the soil led to C storage depletions over time, reducing cycling, supply and availability of soil nutrients, directly affecting the soil biota. Although the biota regulates key functions in the soil, crop residue can also cause proliferation of some important agricultural pests. In addition, crop residues act as physical barriers that protect the soil against raindrop impact and temperature variations. Therefore, intensive crop residue harvest can cause soil structure degradation, leading to soil compaction and increased risks of erosion. With regard to GHG emissions, there is no consensus about the potential impact of management of crop residue harvest. In general, residue harvest decreases CO₂ and N₂O emissions from the decomposition process, but it has no significant effect on CH₄ emissions. Plant growth responses to soil and microclimate changes due to crop residue harvest are site and crop specific. Adoption of the best management practices can mitigate the adverse impacts of crop residue harvest. Longterm experiments within strategic production regions are essential to understand and monitor the impact of integrated agricultural systems and propose customized solutions for sustainable crop residue management in each region or landscape. Furthermore, private and public investments/cooperations are necessary for a better understanding of the potential environmental, economic and social implications of crop residue use for bioenergy production.

In tropical regions, climate conditions favor fast decomposition of soil organic matter (SOM), releasing into the soil organic composts in solid, liquid, and gaseous forms with variable compositions. Dissolved organic matter (DOM), a complex mixture of thousands of organic compounds, is only a small fraction of the decomposition products; however, it is highly mobile and reactive to the soil. Therefore, DOM play a key role in soil aggregation (formation of organometallic complexes), energy source for microorganisms, as well as C storage, cycling, and provision of plant-available nutrients. DOM multifunctionality to sustain soil functions and important ecosystem services have raised global scientific interest in studies on DOM fractions. However, previous studies were conducted predominantly under temperate soil conditions in natural ecosystems. Therefore, there is paucity of information on tropical soil conditions under agricultural systems, where DOM turnover is intensified by management practices. This review synthesized information in the literature to identify and discuss the main sources, transformations, and future of DOM in soils. We also discussed the importance of this fraction in C cycling and other soil properties and processes, emphasizing agricultural systems in tropical soils. Gaps and opportunities were identified to guide future studies on DOM in tropical soils.