Tommaso Boccato

Tommaso Boccato

orcid

Research Focus & Metrics

Academic Career Length

5Years (2022-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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7 June 2024 in Computers in Biology and Medicine
Verified
Journal Article
Open access
MFMatteo Ferrante
Matteo Ferrante
TBTommaso Boccato
Tommaso Boccato
SBStefano Bargione
Stefano Bargione
Nicola ToschiNicola Toschi
Nicola Toschi
Decoding visual representations from human brain activity has emerged as a thriving research domain, particularly in the context of brain-computer interfaces. Our study presents an innovative method that employs knowledge distillation to train an EEG classifier and reconstruct images from the ImageNet and THINGS-EEG 2 datasets using only electroencephalography (EEG) data from participants who have viewed the images themselves (i.e. "brain decoding"). We analyzed EEG recordings from 6 participants for the ImageNet dataset and 10 for the THINGS-EEG 2 dataset, exposed to images spanning unique semantic categories. These EEG readings were converted into spectrograms, which were then used to train a convolutional neural network (CNN), integrated with a knowledge distillation procedure based on a pre-trained Contrastive Language-Image Pre-Training (CLIP)-based image classification teacher network. This strategy allowed our model to attain a top-5 accuracy of 87%, significantly outperforming a standard CNN and various RNN-based benchmarks. Additionally, we incorporated an image reconstruction mechanism based on pre-trained latent diffusion models, which allowed us to generate an estimate of the images that had elicited EEG activity. Therefore, our architecture not only decodes images from neural activity but also offers a credible image reconstruction from EEG only, paving the way for, e.g., swift, individualized feedback experiments.

9 December 2023 in Neural Networks
Verified
Journal Article
Open access
TBTommaso Boccato
Tommaso Boccato
MFMatteo Ferrante
Matteo Ferrante
Andrea DuggentoAndrea Duggento
Andrea Duggento
Nicola ToschiNicola Toschi
Nicola Toschi
This study delves into the crucial aspect of network topology in artificial neural networks (NNs) and its impact on model performance. Addressing the need to comprehend how network structures influence learning capabilities, the research contrasts traditional multilayer perceptrons (MLPs) with models built on various complex topologies using novel network generation techniques. Drawing insights from synthetic datasets, the study reveals the remarkable accuracy of complex NNs, particularly in high-difficulty scenarios, outperforming MLPs. Our exploration extends to real-world datasets, highlighting the task-specific nature of optimal network topologies and unveiling trade-offs, including increased computational demands and reduced robustness to graph damage in complex NNs compared to MLPs. This research underscores the pivotal role of complex topologies in addressing challenging learning tasks. However, it also signals the necessity for deeper insights into the complex interplay among topological attributes influencing NN performance. By shedding light on the advantages and limitations of complex topologies, this study provides valuable guidance for practitioners and paves the way for future endeavors to design more efficient and adaptable neural architectures across various applications.


20 November 2023 in Neurocomputing
Verified
Journal Article
Open access
TBTommaso Boccato
Tommaso Boccato
MFMatteo Ferrante
Matteo Ferrante
ADAndrea Duggento
Andrea Duggento
Nicola ToschiNicola Toschi
Nicola Toschi
Thanks to their ease of implementation, multilayer perceptrons (MLPs) have become ubiquitous in deep learning applications. The graph underlying an MLP is indeed multipartite, i.e. each layer of neurons only connects to neurons belonging to the adjacent layer. In contrast, in vivo brain connectomes at the level of individual synapses suggest that biological neuronal networks are characterized by scale-free degree distributions or exponentially truncated power law strength distributions, hinting at potentially novel avenues for the exploitation of evolution-derived neuronal networks. In this paper, we present “4Ward”, a method and Python library capable of generating flexible and efficient neural networks (NNs) from arbitrarily complex directed acyclic graphs. 4Ward is inspired by layering algorithms drawn from the graph drawing discipline to implement efficient forward passes, and provides significant time gains in computational experiments with various Erdős-Rényi graphs. 4Ward not only overcomes the sequential nature of the learning matrix method, by parallelizing the computation of activations, but also addresses the scalability issues encountered in the current state-of-the-art and provides the designer with freedom to customize weight initialization and activation functions. Our algorithm can be of aid for any investigator seeking to exploit complex topologies in a NN design framework at the microscale.

22 August 2025 in Communications Biology
Verified
Journal Article
Open access
PDF file
MFMatteo Ferrante
Matteo Ferrante
TBTommaso Boccato
Tommaso Boccato
Nicola ToschiNicola Toschi
Nicola Toschi
RVRufin VanRullen
Rufin VanRullen
Electrophysiological and neuroimaging studies have revealed how the brain encodes various visual categories and concepts. An open question is how combinations of multiple visual concepts are represented in terms of the component brain patterns: are brain responses to individual concepts composed according to algebraic rules? To explore this, we generated “conceptual perturbations" in neural space by averaging fMRI responses to images with a shared concept (e.g., “winter" or “summer"). After thresholding to ensure specificity, we applied these perturbations to the neural pattern associated with a base image, forming new brain patterns that incorporate the added concept. These modified brain patterns were then decoded into images using a pretrained fMRI-to-image decoding model. Qualitative and quantitative inspection of the resulting images provides insight into how the brain might combine visual concepts. For example, adding a “winter" perturbation to the brain pattern of a man on a skateboard yields a new pattern representing a man on a snowboard in a winter scene—even when the perturbation modifies only a small subset of voxels. Our findings reveal that compositional processes in neural representations may lead to predictable perceptual outcomes, as interpreted by our decoding model. This suggests that the brain’s combinatory encoding of concepts may follow a systematic, algebraic-like process—what we term “brain algebra." Although our study is model-driven, it opens avenues for future empirical work into the mechanisms of compositionality in the brain.

Verified
Journal Article
Open access
PDF file
Marianna IngleseMarianna Inglese
Marianna Inglese
MFMatteo Ferrante
Matteo Ferrante
TBTommaso Boccato
Tommaso Boccato
Allegra ContiAllegra Conti
Allegra Conti
CPChiara A. Pistolese
Chiara A. Pistolese
Nicola ToschiNicola Toschi
Nicola Toschi
Traditional imaging techniques for breast cancer (BC) diagnosis and prediction, such as X-rays and magnetic resonance imaging (MRI), demonstrate varying sensitivity and specificity due to clinical and technological factors. Consequently, positron emission tomography (PET), capable of detecting abnormal metabolic activity, has emerged as a more effective tool, providing critical quantitative and qualitative tumor-related metabolic information. This study leverages a public clinical dataset of dynamic 18F-Fluorothymidine (FLT) PET scans from BC patients, extending conventional static radiomics methods to the time domain—termed as ‘Dynomics’. Radiomic features were extracted from both static and dynamic PET images on lesion and reference tissue masks. The extracted features were used to train an XGBoost model for classifying tumor versus reference tissue and complete versus partial responders to neoadjuvant chemotherapy. The results underscored the superiority of dynamic and static radiomics over standard PET imaging, achieving accuracy of 94% in tumor tissue classification. Notably, in predicting BC prognosis, dynomics delivered the highest performance, achieving accuracy of 86%, thereby outperforming both static radiomics and standard PET data. This study illustrates the enhanced clinical utility of dynomics in yielding more precise and reliable information for BC diagnosis and prognosis, paving the way for improved treatment strategies.