Dmitry Tolmachev

Dr. Dmitry Tolmachev

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Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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DTDmitry Tolmachev
Dmitry Tolmachev
NLNatalia Lukasheva
Natalia Lukasheva
RRRuslan R. Ramazanov
Ruslan R. Ramazanov
VNVictor Nazarychev
Victor Nazarychev
NBNatalia Borzdun
Natalia Borzdun
MKMikko Karttunen
Mikko Karttunen
Deep eutectic solvents (DESs) are one of the most rapidly evolving types of solvents, appearing in a broad range of applications, such as nanotechnology, electrochemistry, biomass transformation, pharmaceuticals, membrane technology, biocomposite development, modern 3D-printing, and many others. The range of their applicability continues to expand, which demands the development of new DESs with improved properties. To do so requires an understanding of the fundamental relationship between the structure and properties of DESs. Computer simulation and machine learning techniques provide a fruitful approach as they can predict and reveal physical mechanisms and readily be linked to experiments. This review is devoted to the computational research of DESs and describes technical features of DES simulations and the corresponding perspectives on various DES applications. The aim is to demonstrate the current frontiers of computational research of DESs and discuss future perspectives.

21 March 2020 in Cellulose
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Mikhail SmirnovMikhail Smirnov
Mikhail Smirnov
Maria SokolovaMaria Sokolova
Maria Sokolova
DTDmitry Tolmachev
Dmitry Tolmachev
VVVitaly Konstantinovich Vorobiov
Vitaly Konstantinovich Vorobiov
IKIgor Kasatkin
Igor Kasatkin
AYAlexander Yakimansky
Alexander Yakimansky

22 November 2019 in Journal of Chemical Theory and Computation
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Journal Article
Closed access
DTDmitry Tolmachev
Dmitry Tolmachev
OBOksana S. Boyko
Oksana S. Boyko
NLNatalia Viacheslavovna Lukasheva
Natalia Viacheslavovna Lukasheva
HMHector Martinez-Seara
Hector Martinez-Seara
MKMikko Karttunen
Mikko Karttunen

4 March 2016 in Polymer International
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AGArtyom Glova
Artyom Glova
SFStanislav G Falkovich
Stanislav G Falkovich
SLSergey V. Larin
Sergey V. Larin
DMDaria Mezhenskaya
Daria Mezhenskaya
NLNatalia V Lukasheva
Natalia V Lukasheva
SLSergey V. Larin
Sergey V. Larin

29 November 2023 in Biomacromolecules
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Journal Article
Open access
DTDmitry Tolmachev
Dmitry Tolmachev
MMMaaria Malkamäki
Maaria Malkamäki
Markus B. LinderMarkus B. Linder
Markus B. Linder
MSMaria Sammalkorpi
Maria Sammalkorpi
Future sustainable materials based on designer biomolecules require control of the solution assembly, but also interfacial interactions. Alcohol treatments of protein materials are an accessible means to this, making understanding of the process at the molecular level of seminal importance. We focus here on the influence of ethanol on spidroins, the main proteins of silk. By large-scale atomistically detailed molecular dynamics (MD) simulations and interconnected experiments, we characterize the protein aggregation, secondary structure changes, molecular level origins of them, and solvation environment changes for the proteins, as induced by ethanol as a solvation additive. The MD and circular dichoroism (CD) findings jointly show that ethanol promotes ordered structure in the protein molecules, leading to an increase of helix content and turns but also increased aggregation, as revealed by dynamic light scattering (DLS) and light microscopy. The structural changes correlate at the molecular level with increased intramolecular hydrogen bonding. The simulations reveal that polar amino acids, such as glutamine and serine, are most influenced by ethanol, whereas glycine residues are most prone to be involved in the ethanol-induced secondary structure changes. Furthermore, ethanol engages in interactions with the hydrophobic alanine-rich regions of the spidroin, significantly decreasing the hydrophobic interactions of the protein with itself and its surroundings. The protein solutes also change the microstructure of water/ethanol mixtures, essentially decreasing the level of larger local clustering. Overall, the work presents a systematic characterization of ethanol effects on a widely used, common protein type, spidroins, and generalizes the findings to other intrinsically disordered proteins by pinpointing the general features of the response. The results can aid in designing effective alcohol treatments for proteins, but also enable design and tuning of protein material properties by a relatively controllable solvation handle, the addition of ethanol.