Joseph Cook

Dr. Joseph Cook

orcid

Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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29 October 2018 in Nature Climate Change
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Journal Article
Closed access
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SSS. McKenzie Skiles
S. McKenzie Skiles
MFMark Flanner
Mark Flanner
JCJoseph Cook
Joseph Cook
MDMarie Dumont
Marie Dumont
TPThomas H. Painter
Thomas H. Painter

9 December 2015 in Progress in Physical Geography: Earth and Environment
Verified
Journal Article
Open access
JCJoseph Cook
Joseph Cook
AEArwyn Edwards
Arwyn Edwards
NTNozomu Takeuchi
Nozomu Takeuchi
TITristram David Linton Irvine-Fynn
Tristram David Linton Irvine-Fynn
Cryoconite is granular sediment found on glacier surfaces comprising both mineral and biological material. Despite long having been recognised as an important glaciological and biological phenomenon cryoconite remains relatively poorly understood. Here, we appraise the literature on cryoconite for the first time, with the aim of synthesising and evaluating current knowledge to direct future investigations. We review the properties of cryoconite, the environments in which it is found, the biology and biogeochemistry of cryoconite, and its interactions with climate and anthropogenic pollutants. We generally focus upon cryoconite in the Arctic in summer, with Antarctic and lower latitude settings examined individually. We then compare the current state-of-the-science with that at the turn of the twentieth century, and suggest directions for future research including specific recommendations for studies at a range of spatial scales and a framework for integrating these into a more holistic understanding of cryoconite and its role in the cryosphere.

27 September 2012 in The ISME Journal
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Journal Article
Closed access
Marian Louise YallopMarian Louise Yallop
Marian Louise Yallop
AAAlexandre Anesio
Alexandre Anesio
RPRupert G Perkins
Rupert G Perkins
JCJoseph Cook
Joseph Cook
JTJon Telling
Jon Telling
NRNicholas Roberts
Nicholas Roberts
Darkening of parts of the Greenland ice sheet surface during the summer months leads to reduced albedo and increased melting. Here we show that heavily pigmented, actively photosynthesising microalgae and cyanobacteria are present on the bare ice. We demonstrate the widespread abundance of green algae in the Zygnematophyceae on the ice sheet surface in Southwest Greenland. Photophysiological measurements (variable chlorophyll fluorescence) indicate that the ice algae likely use screening mechanisms to downregulate photosynthesis when exposed to high intensities of visible and ultraviolet radiation, rather than non-photochemical quenching or cell movement. Using imaging microspectrophotometry, we demonstrate that intact cells and filaments absorb light with characteristic spectral profiles across ultraviolet and visible wavelengths, whereas inorganic dust particles typical for these areas display little absorption. Our results indicate that the phototrophic community growing directly on the bare ice, through their photophysiology, most likely have an important role in changing albedo, and subsequently may impact melt rates on the ice sheet.

29 January 2020 in The Cryosphere
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Journal Article
Open access
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JCJoseph Cook
Joseph Cook
ATAndrew Tedstone
Andrew Tedstone
CWChristopher Williamson
Christopher Williamson
JMJenine McCutcheon
Jenine McCutcheon
AHAndrew J. Hodson
Andrew J. Hodson
MTMartyn Tranter
Martyn Tranter
Melting of the Greenland Ice Sheet (GrIS) is the largest single contributor to eustatic sea level and is amplified by the growth of pigmented algae on the ice surface, which increases solar radiation absorption. This biological albedo-reducing effect and its impact upon sea level rise has not previously been quantified. Here, we combine field spectroscopy with a radiative-transfer model, supervised classification of unmanned aerial vehicle (UAV) and satellite remote-sensing data, and runoff modelling to calculate biologically driven ice surface ablation. We demonstrate that algal growth led to an additional 4.4–6.0 Gt of runoff from bare ice in the south-western sector of the GrIS in summer 2017, representing 10 %–13 % of the total. In localized patches with high biomass accumulation, algae accelerated melting by up to 26.15±3.77 % (standard error, SE). The year 2017 was a high-albedo year, so we also extended our analysis to the particularly low-albedo 2016 melt season. The runoff from the south-western bare-ice zone attributed to algae was much higher in 2016 at 8.8–12.2 Gt, although the proportion of the total runoff contributed by algae was similar at 9 %–13 %. Across a 10 000 km2 area around our field site, algae covered similar proportions of the exposed bare ice zone in both years (57.99 % in 2016 and 58.89 % in 2017), but more of the algal ice was classed as “high biomass” in 2016 (8.35 %) than 2017 (2.54 %). This interannual comparison demonstrates a positive feedback where more widespread, higher-biomass algal blooms are expected to form in high-melt years where the winter snowpack retreats further and earlier, providing a larger area for bloom development and also enhancing the provision of nutrients and liquid water liberated from melting ice. Our analysis confirms the importance of this biological albedo feedback and that its omission from predictive models leads to the systematic underestimation of Greenland's future sea level contribution, especially because both the bare-ice zones available for algal colonization and the length of the biological growth season are set to expand in the future.

14 January 2018 in Sensors
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Journal Article
Open access
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Andrew McgonigleAndrew Mcgonigle
Andrew Mcgonigle
TWThomas Wilkes
Thomas Wilkes
TPTom Pering
Tom Pering
JWJon Willlmott
Jon Willlmott
JCJoseph Cook
Joseph Cook
APAlfio Parisi
Alfio Parisi
Smartphones are playing an increasing role in the sciences, owing to the ubiquitous proliferation of these devices, their relatively low cost, increasing processing power and their suitability for integrated data acquisition and processing in a ‘lab in a phone’ capacity. There is furthermore the potential to deploy these units as nodes within Internet of Things architectures, enabling massive networked data capture. Hitherto, considerable attention has been focused on imaging applications of these devices. However, within just the last few years, another possibility has emerged: to use smartphones as a means of capturing spectra, mostly by coupling various classes of fore-optics to these units with data capture achieved using the smartphone camera. These highly novel approaches have the potential to become widely adopted across a broad range of scientific e.g., biomedical, chemical and agricultural application areas. In this review, we detail the exciting recent development of smartphone spectrometer hardware, in addition to covering applications to which these units have been deployed, hitherto. The paper also points forward to the potentially highly influential impacts that such units could have on the sciences in the coming decades.

14 March 2018 in Nature Communications
Verified
Journal Article
Open access
PDF file
JRJonathan C. Ryan
Jonathan C. Ryan
AHAlun Hubbard
Alun Hubbard
MSMarek Stibal
Marek Stibal
TITristram David Linton Irvine-Fynn
Tristram David Linton Irvine-Fynn
JCJoseph Cook
Joseph Cook
JBJason Box
Jason Box
Albedo—a primary control on surface melt—varies considerably across the Greenland Ice Sheet yet the specific surface types that comprise its dark zone remain unquantified. Here we use UAV imagery to attribute seven distinct surface types to observed albedo along a 25 km transect dissecting the western, ablating sector of the ice sheet. Our results demonstrate that distributed surface impurities—an admixture of dust, black carbon and pigmented algae—explain 73% of the observed spatial variability in albedo and are responsible for the dark zone itself. Crevassing and supraglacial water also drive albedo reduction but due to their limited extent, explain just 12 and 15% of the observed variability respectively. Cryoconite, concentrated in large holes or fluvial deposits, is the darkest surface type but accounts for <1% of the area and has minimal impact. We propose that the ongoing emergence and dispersal of distributed impurities, amplified by enhanced ablation and biological activity, will drive future expansion of Greenland's dark zone.