The vomeronasal organ (VNO) plays a key role in mammals, since it detects pheromones thus enabling social interactions between congeners. VNO inflammatory changes have been shown to severely impact animal life, leading to impaired social interactions in groups, such as in pigs. Environmental air is known to be strongly modified in farms, and it is suspected to be one of the causes of this alteration. This study aimed to compare via histology the VNOs of pigs housed in intensive conditions (n = 38) to those of pigs housed in free-range farming conditions (n = 35). VNO sections were stained in hematoxylin and eosin to assess the presence of nonsensory and sensory epithelium alterations and collagenolysis. The nonsensory epithelium was significantly more inflamed in animals in free-range farming conditions than those in intensive conditions (p < 0.0001) and was more strongly affected by signs of collagenolysis (p < 0.0001). The sensory epithelium seemed to be less altered by the different environmental conditions (p = 0.7267). These results suggest that species-typical pig behaviors, such as digging and rooting for food, could facilitate the presence of microparticles in the oral cavity and their entrance into the vomeronasal canals, leading to changes to the VNO.