The rising demand for sustainable, nutritious, and functional food options has fueled growing interest in plant-based fermented foods. These products offer enhanced sensory, functional, and health-promoting properties, largely driven by microbial activity during fermentation. This review examines recent advances in microbial biotechnology—including the use of novel starter cultures, strain engineering, CRISPR-based genome editing, and precision fermentation that are reshaping the nutritional landscape of plant-based fermented foods. Key benefits such as improved protein digestibility, bioactive compound synthesis, antinutrient reduction, and micronutrient bioavailability are explored. Additionally, the review highlights the potential of microbial innovations to enhance sustainability, address global nutrition challenges, and improve consumer acceptance through better sensory quality. It also discusses challenges related to regulatory frameworks, scalability, and consumer perception. This review aims to provide a comprehensive understanding of how microbial processes can optimize the nutritional and functional value of plant-based fermented foods in alignment with future food system goals.

Anthropogenic activities and increasing human population has led to one of the major global problems of heavy metal contamination in ecosystems and to the generation of a huge amount of waste material biomass. Hexavalent chromium [Cr(VI)] is the major contaminant introduced by various industrial effluents and activities into the ecosystem. Cr(VI) is a known mutagen and carcinogen with numerous detrimental effects on the health of humans, plants, and animals, jeopardizing the balance of ecosystems. Therefore, the remediation of such a hazardous toxic metal pollutant from the environment is necessary. Various physical and chemical methods are available for the sequestration of toxic metals. However, adsorption is recognized as a more efficient technology for Cr(VI) remediation. Adsorption by utilizing waste material biomass as adsorbents is a sustainable approach in remediating hazardous pollutants, thus serving the dual purpose of remediating Cr(VI) and exploiting waste material biomass in an eco- friendly manner. Agricultural biomass, industrial residues, forest residues, and food waste are the primary waste material biomass that could be employed, with different strategies, for the efficient sequestration of toxic Cr(VI). This review focuses on the use of diverse waste biomass, such as industrial and agricultural by-products, for the effective remediation of Cr(VI) from aqueous solutions. The review also focuses on the operational conditions that improve Cr(VI) remediation, describes the efficacy of various biomass materials and modifications, and assesses the general sustainability of these approaches to reducing Cr(VI) pollution.

Pollution by emerging contaminants like microplastic is one of the major environmental concerns. Microplastics have become ubiquitous anthropogenic pollutants of aquatic, terrestrial and atmospheric ecosystems, and can generate considerable ecological and health-related risks. Conventional remediation regimes are widely ineffective, due to the physicochemical recalcitrance of polymer matrices. Recent advances in microbial biotechnology have revealed several contrasting microbial taxa and enzyme systems, which can convert or mineralize synthetic polymers through a variety of pathways of complex biochemistry. This review summarizes the current understanding of microbial–polymer interactions, including surface colonization, biofilm-mediated depolymerization, and intracellular uptake of degradation intermediates. It also discusses recent developments in enzyme engineering, strain optimization employing the CRISPR method, and synthetic biology approaches improving catabolic efficiency. The advent of a variety of multi-omics technologies of metagenomics, transcriptomics, and metabolomics has enabled the characterization of novel hydrolases and oxidoreductases with a high potential catalytic efficiency. Advances in nanobiocatalysis, enzyme immobilization, and bioreactor technology improve the scale-up of these processes. Related molecular developments and environmental applications will promote the application of microbial biotechnology as a selective and sustainable tool for the mitigation of microplastic accumulation and the development of a circular bioeconomy that interacts positively with ecosystem resilience.

Fungal cell factories serve as a robust platform for sustainable biomanufacturing, owing to their unparalleled metabolic diversity, enzymatic properties, and resilience to diverse environmental conditions. Recent advances in fungal biotechnology have vastly enhanced the potential for fungi to be used in the production of renewable bioenergy and functional biomaterials. Concurrent advances in systems biology, metabolic engineering, and synthetic biology have enabled the fine-tuning of metabolic fluxes to facilitate the enhanced biosynthesis of biofuels, including bioethanol, biodiesel, biogas, and biohydrogen, as well as mycelium-derived biopolymers. The lignocellulolytic fungi like Trichoderma reesei, Aspergillus niger, and Phanerochaete chrysosporium have been the main organisms of focus with respect to engineering, which enhances hydrolytic enzyme excretion, growth on substrates, and redox balance in these fungi. This engineering work parallels a new ability in omics technologies and CRISPR–Cas genome editing, permitting the facilitation and identification of regulation of biosynthetic gene clusters responsible for lipid accumulation, secondary metabolite production, and nanomaterial synthesis in fungi. Furthermore, new fungal-derived biomaterials have been reported, such as chitosan, β-glucans, and mycelium composites, which have been advanced as biodegradable alternatives to plastics and building materials derived from petroleum. This review critically reviews some of the more recent developments in respect of the reprogramming of fungal metabolism, process intensification strategies and integrated biorefinery applications. This will illustrate the convergence of fungal systems biology with the principles of circular bioeconomy and point out the technological, economic, and regulatory bottlenecks which need to be overcome to fully realise the potential of fungi as the biofactories of the future for the sustainable production of energy and materials.