Protein structure prediction is important for understanding their function and behavior. This review study presents a comprehensive review of the computational models used in predicting protein structure. It covers the progression from established protein modeling to state-of-the-art artificial intelligence (AI) frameworks. The paper will start with a brief introduction to protein structures, protein modeling, and AI. The section on established protein modeling will discuss homology modeling, ab initio modeling, and threading. The next section is deep learning-based models. It introduces some state-of-the-art AI models, such as AlphaFold (AlphaFold, AlphaFold2, AlphaFold3), RoseTTAFold, ProteinBERT, etc. This section also discusses how AI techniques have been integrated into established frameworks like Swiss-Model, Rosetta, and I-TASSER. The model performance is compared using the rankings of CASP14 (Critical Assessment of Structure Prediction) and CASP15. CASP16 is ongoing, and its results are not included in this review. Continuous Automated Model EvaluatiOn (CAMEO) complements the biennial CASP experiment. Template modeling score (TM-score), global distance test total score (GDT_TS), and Local Distance Difference Test (lDDT) score are discussed too. This paper then acknowledges the ongoing difficulties in predicting protein structure and emphasizes the necessity of additional searches like dynamic protein behavior, conformational changes, and protein–protein interactions. In the application section, this paper introduces some applications in various fields like drug design, industry, education, and novel protein development. In summary, this paper provides a comprehensive overview of the latest advancements in established protein modeling and deep learning-based models for protein structure predictions. It emphasizes the significant advancements achieved by AI and identifies potential areas for further investigation.
A Content Delivery Network (CDN) is a powerful system of distributed caching servers that aims to accelerate content delivery, like high-definition video, IoT applications, and ultra-low-latency services, efficiently and with fast velocity. This has become of paramount importance in the post-pandemic era. Challenges arise when exponential content volume growth and scalability across different geographic locations are required. This paper investigates data-driven evaluations of CDN algorithms in dynamic server selection for latency reduction, bandwidth throttling for efficient resource management, real-time Round Trip Time analysis for adaptive routing, and programmatic network delay simulation to emulate various conditions. Key performance metrics, such as round-trip time (RTT) and CPU usage, are carefully analyzed to evaluate scalability and algorithmic efficiency through two experimental setups: a constrained edge-like local system and a scalable FABRIC testbed. The statistical validation of RTT trends, alongside CPU utilization, is presented in the results. The optimization process reveals significant trade-offs between scalability and resource consumption, providing actionable insights for effectively deploying and enhancing CDN algorithms in edge and distributed computing environments.